BAC Information

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BAC

Clone NameMSMg01-427H15
Chromosome2 (Build37)
Map Location 26,782,354 - 26,782,865
singlet/doubletsinglet
Overlap geneSurf4
Upstream geneCamsap1, LOC100040100, LOC665199, Ubadc1, Btbd14a, C330006A16Rik, Lhx3, Qscn6l1, C030048H21Rik, 4932418E24Rik, Gpsm1, D2Bwg1335e, Card9, Snapc4, Sdccag3, Pmpca, Inpp5e, AU024582, Notch1, Egfl7, Agpat2, B230317C12Rik, 5730588L14Rik, LOC100039446, Lcn4, LOC669582, Abo, Surf6, Surf5-ps, Surf5, Rpl7a, Surf1, Surf2
Downstream geneGm711, Rexo4, Adamts13, 5930434B04Rik, Slc2a6, LOC665315, 1110002H13Rik, Adamtsl2, C630035N08Rik, Dbh, Sardh, Vav2, D2Bwg1423e, Brd3, Wdr5, Rxra, Col5a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-427H15.T7 (MSMg01no427_h15.b1)MSMg01-427H15.TJ (MSMg01no427_h15.g1)
ACCAG520667AG520668
length736736
length of high quality
(start - end)		533 (53 - 585)548 (83 - 630)
definitionCHROMAT_FILE: MSMg01no427_h15.b1 PHD_FILE: MSMg01no427_h15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:22 2005CHROMAT_FILE: MSMg01no427_h15.g1 PHD_FILE: MSMg01no427_h15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCAAACTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAG
GATCCGCGGAATTCCTAGACTTCGATATCCTGAGAGCCTTTCAGATGGTT
TCTGTGTCTCCCACTTGTTAGTGTGCCCCACATTTGTCTTAGGAACTGTG
TGTCTTGTGGTTTTTCTCCTTTGATAGCTTTGGAGGGTGGAACAAACCTG
GTAGATAGTATTAGACATTGCCTATGGTCCTGTGCCAGATGTGTGTGACG
CTGTCTTTGTCTCTGGGACTAAGTGTTGATCATCATGTGTCTAGACTTAC
GATGGGAGCATCTAAAGCAGGTGTTGTTTTCTGCAGCCTGCCCTGGCAAG
GCACTGGACCTGCTGAGGGCCTCTCTGTCTTCCAGAGAGCTGGCTTGTCT
CCTCTGACCTGTTGTCATGATGAGGTTGCAGCCACCTCACCAGTGTGTTC
TGTGGTCTTACAGTTCCTTCGAGTCACCAAGCAGTACCTGCCTCATGTGG
CGCGCCTCTGCCTGATCAGCACCTTCCTGGAGGATGGCATCCGCATGTGG
TTCCAGTGGAGTGAGCAGCGTGACTATATCGACACCACCTTGGAGCTGTG
GCTACCTGTTGGCCTCATCCTTCGTGTTCCTCACCCTGCTGGGACAGTTG
AGTAAGTGGCTCTCTTACCTCTCTAGTATACTTCTGGAGCAACCTGGTCC
CTTGACTGAAACTTCCCTTTCTTGTGTGTTGGCCCT

NNNNNNCCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTACTAAAACCAGCTGG
CCCTGAGATTTTTTTGGTTGGGAGAATTTTAATGGCTGCTTCTATATCCC
TAGAGGTTACAGGGCTGTTTACTTGATCTTAATTTAATTTTGGTATGTGG
TATCTATCTAGAAAAATCATCCATTTTGTCTAGATTCTCGAGTTTTCTTG
AAAATAGAGTTTTCTAGGGGTATTTAAATTTTTTAAAAATTTCCTCAGTT
TCTATTATTATGTCTCCCTTCTCATCTCTGATTTTGTTAATTTGGATACT
GTCTCTGTGCCCTTTAGTTAGTTTGCATAAGGGTTTATCTATCTTGTTGA
TTTTCTCAAAGAATCAGCTCTTGGTTTTGTTGATTCTTTGTATTGTTCTT
TATTTCTAATTAGTTGATTTCAGCCATGAGTTTGACTATTTCCTGGCCAG
TTTCCTCCTCTCCTGTGTGTTTGGTTTGCTTTTTTTTGTTCTAGGGCTTT
AGGGTGAGCTGTTAAATTGTTAGTATAGTATCTCTCCAATTTCTTTATGA
AGGCACTTAGTGCTATGAATTTTCCTCTTAACACTATTTTTATAGTGTCC
CATAAGTTTTGATGTGCTGTACCTTCATTTCCATTGAATTATAGAAAGAC
TTTAAATTTTTTTTCTTTCCTCCCGGACAAAGTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no427_h15.b1 MSMg01no427_h15.b1 CHROMAT_FILE:
MSMg01no427_h15.b1 PHD_FILE: MSMg01no427_h15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:22 2005
         (533 letters)



>mm_chr2_26782133_26783065
          Length = 933

 Score =  951 bits (492), Expect = 0.0
 Identities = 507/512 (99%)
 Strand = Plus / Minus

                                                                       
Query: 22  gatatcctgagagcctttcagatggtttctgtgtctcccacttgttagtgtgccccacat 81
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 gatatcctgagagcctttcagatggtttctgtgtctcccacttgttagtgtgccccacat 674

                                                                       
Query: 82  ttgtcttaggaactgtgtgtcttgtggtttttctcctttgatagctttggagggtggaac 141
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 ttgtcttgggaactgtgtgtcttgtggtttttctcctttgatagctttggagggtggaac 614

                                                                       
Query: 142 aaacctggtagatagtattagacattgcctatggtcctgtgccagatgtgtgtgacgctg 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 aaacctggtagatagtattagacattgcctatggtcctgtgccagatgtgtgtgacgctg 554

                                                                       
Query: 202 tctttgtctctgggactaagtgttgatcatcatgtgtctagacttacgatgggagcatct 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tctttgtctctgggactaagtgttgatcatcatgtgtctagacttacgatgggagcatct 494

                                                                       
Query: 262 aaagcaggtgttgttttctgcagcctgccctggcaaggcactggacctgctgagggcctc 321
           |||||||||||||  | |||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 493 aaagcaggtgttgagtcctgcagtctgccctggcaaggcactggacctgctgagggcctc 434

                                                                       
Query: 322 tctgtcttccagagagctggcttgtctcctctgacctgttgtcatgatgaggttgcagcc 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tctgtcttccagagagctggcttgtctcctctgacctgttgtcatgatgaggttgcagcc 374

                                                                       
Query: 382 acctcaccagtgtgttctgtggtcttacagttccttcgagtcaccaagcagtacctgcct 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 acctcaccagtgtgttctgtggtcttacagttccttcgagtcaccaagcagtacctgcct 314

                                                                       
Query: 442 catgtggcgcgcctctgcctgatcagcaccttcctggaggatggcatccgcatgtggttc 501
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 catgtggcgcgcctctgcctgatcagcaccttcctggaggatggcatccgcatgtggttc 254

                                           
Query: 502 cagtggagtgagcagcgtgactatatcgacac 533
           ||||||||||||||||||||||||||||||||
Sbjct: 253 cagtggagtgagcagcgtgactatatcgacac 222


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space:   482729
Effective search space used:   482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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