BAC Information

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BAC

Clone NameMSMg01-428A24
Chromosome2 (Build37)
Map Location 90,992,339 - 91,165,112
singlet/doubletdoublet
Overlap geneMadd, Nr1h3, Acp2, Ddb2, Pacsin3, Zfp289, 1110051M20Rik
Upstream geneLOC627525, LOC100043096, Olfr1506, Olfr142, Olfr1271, Olfr1272, Olfr1273, LOC100042690, LOC100043113, LOC668629, GA_x5J8B7W2BV0-3116-4045, Ptprj, 4933423P22Rik, Nup160, Fnbp4, Rpl30-ps3, Agbl2, Mtch2, C1qtnf4, Ndufs3, Kbtbd4, Ptpmt1, Cugbp1, LOC279067, Rapsn, Psmc3, Slc39a13, Sfpi1, Mybpc3
Downstream geneLrp4, LOC619941, Ckap5, F2, Zfp408, Arhgap1, D2Ertd391e, LOC100043179, D230010M03Rik, D030051N19Rik, Chrm4, Mdk, Dgkz, Creb3l1, Phf21a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428A24.T7 (MSMg01no428_a24.b1)MSMg01-428A24.TJ (MSMg01no428_a24.g1)
ACCAG521115AG521116
length766770
length of high quality
(start - end)
235 (329 - 563)534 (70 - 603)
definitionCHROMAT_FILE: MSMg01no428_a24.b1 PHD_FILE: MSMg01no428_a24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:07 2005CHROMAT_FILE: MSMg01no428_a24.g1 PHD_FILE: MSMg01no428_a24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:07 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(90,992,339 - 90,992,573)(91,164,579 - 91,165,112)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCAAGACAGTTCCCGCTACACAGAGAAACCCTGTTTCANAAGAAAAAAA
GAAAAAGGAAAAGGAAAAAGAAAAAGAAAAAGGAGGCATTTAAGTGTTGT
GATGAGAACAGATTTCATCTCAGATCCGCAGAGGTGTGCAGACCTCACAT
GGAAACTGCTGTACTCTAACAGCTGGAGGACTGAGAGTCCCCACACTGAA
CAGAAGGACCAACACCTCACCTGGACTACTGCCCCAGTCTCTAAGCTACT
AACTATAACTACCCACCTCTAATTTACTAACTCTAACTACCCATTCTCTA
AACTCCTAACTCTAACTGCCCATTCTCTAAACTACTAACTACCCATTCTC
TAAACTACTAACTCTAACTACCCATTCTCTAAACTACTAACTATAGCTAC
CCATCTCTAAACTACTAACTGTAACTACCGATTCTCCTCTAAACTAGGCA
TTAACTGGGCTGCATAGCAGCATGGCAGACACGTTTAGTGTGAAAGCGCT
GTATAGGCAGGGGGACACGCAGGATAAAAGGGACGGTCCGATGTGTTCAC
CAGGCTGTTCAGCCTGATCGAGCACCTCATTGACTTGCTGGCTGCACACC
TGCCCACTGTGTTACTTTCCCATTAGGCGCCGTACTTTCTTCCTGAAGTC
CTTCCTGTTCTCCTGCTAAGCCAAGAACGGATTCTCTATTAATGGCTCTG
TTTCTCTTTCCCAGCG
TGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTCTGCTTCGCTGCTGGCTGCTGCCAGACA
CAGAGTGCTAAATCCTGTCAGTCGGAGACTTCAAATGCTGATGTGTGAAA
CAGTGCTGCGAACTGGCGAGTTGGCGCCCGAAGCTCATTCAGGCTGACTG
CTTTGCCAATTAACCATGGCAGTGGAAGGTGACAGCACAGAGGAGAAGTG
TACTTCCACTGCCCATGCCATATCATCACTGTGGGAACAGTGTACCTGGC
CATGTCCCCATCTTTCCCTTTGTCAGTAGGCCACTCTAGTCACTGGTAAG
CTTCAATTCTGTTTCCTTCAACATCGTTCCTTTCCCAAGCCTAATAGAGC
AATTTCTTTAACAGCTTGCAACACACCAGGGATAGAACTAGCATTAATGT
GCAGAATGGAAAAGCAGAGAGCAAAACACTTTTGCAGCTGGCTCCTAGCA
TCTTACATGCACCCCACCCCACTTCCACCAGTGTGTGGCTGCCTCCTCTT
CTGGCTCAGTGACATCTCCAGCAGGCCAGCCTCCACTCCCCTGTTTCATG
TGCTCCTGCATGCTTCTACCAAATGCCACACCTCTCTCTACATCTCACCT
CACTTCCCCTTCTTAAAATATTTTTTTGTCTTTGCTGCCTGCATCCCCAC
ACCCCGGAATATAAGCACTCCCAAAAGGGGATCTTTATCCCCCTGGGGTG
TTACACCCATTTTCTTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_a24.b1 MSMg01no428_a24.b1 CHROMAT_FILE:
MSMg01no428_a24.b1 PHD_FILE: MSMg01no428_a24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:07 2005
         (235 letters)



>mm_chr2_90992139_90992773
          Length = 635

 Score =  424 bits (219), Expect = e-123
 Identities = 231/235 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aactctaactacccattctctaaactcctaactctaactgcccattctctaaactactaa 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 aactctaactacccattctctaaactactaactctaactgcccattctctaaactactaa 260

                                                                       
Query: 61  ctacccattctctaaactactaactctaactacccattctctaaactactaactatagct 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 ctacccattctctaaactactaactctaactacccattctccaaactactaactatagct 320

                                                                       
Query: 121 acccatctctaaactactaactgtaactaccgattctcctctaaactaggcattaactgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acccatctctaaactactaactgtaactaccgattctcctctaaactaggcattaactgg 380

                                                                  
Query: 181 gctgcatagcagcatggcagacacgtttagtgtgaaagcgctgtataggcagggg 235
           ||||||||||||||||||||||  |||||||||||||||||||||||||||||||
Sbjct: 381 gctgcatagcagcatggcagacgtgtttagtgtgaaagcgctgtataggcagggg 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no428_a24.g1 MSMg01no428_a24.g1 CHROMAT_FILE:
MSMg01no428_a24.g1 PHD_FILE: MSMg01no428_a24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:07 2005
         (534 letters)



>mm_chr2_91164379_91165312
          Length = 934

 Score =  994 bits (514), Expect = 0.0
 Identities = 529/534 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctctgcttcgctgctggctgctgccagacacagagtgctaaatcctgtcagtcggagac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 tctctgcttcgctgctggctgctgccagacacagagtgctaaatcctgtcagtcggagac 675

                                                                       
Query: 61  ttcaaatgctgatgtgtgaaacagtgctgcgaactggcgagttggcgcccgaagctcatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 ttcaaatgctgatgtgtgaaacagtgctgcgaactggcgagttggcgcccgaagctcatt 615

                                                                       
Query: 121 caggctgactgctttgccaattaaccatggcagtggaaggtgacagcacagaggagaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 caggctgactgctttgccaattaaccatggcagtggaaggtgacagcacagaggagaagt 555

                                                                       
Query: 181 gtacttccactgcccatgccatatcatcactgtgggaacagtgtacctggccatgtcccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 gtacttccactgcccatgccatatcatcactgtgggaacagtgtacctggccatgtcccc 495

                                                                       
Query: 241 atctttccctttgtcagtaggccactctagtcactggtaagcttcaattctgtttccttc 300
           |||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 atctttccccatggcagtaggccactctagtcactggtaagcttcaattctgtttccttc 435

                                                                       
Query: 301 aacatcgttcctttcccaagcctaatagagcaatttctttaacagcttgcaacacaccag 360
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 434 aacatcgttcctttcccaagcctgatagagcaatttctttaacagcttgcaacacaccag 375

                                                                       
Query: 361 ggatagaactagcattaatgtgcagaatggaaaagcagagagcaaaacacttttgcagct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ggatagaactagcattaatgtgcagaatggaaaagcagagagcaaaacacttttgcagct 315

                                                                       
Query: 421 ggctcctagcatcttacatgcaccccaccccacttccaccagtgtgtggctgcctcctct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ggctcctagcatcttacatgcaccccaccccacttccaccagtgtgtggctgcctcctct 255

                                                                 
Query: 481 tctggctcagtgacatctccagcaggccagcctccactcccctgtttcatgtgc 534
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 254 tctggctcagtgacatctccagcaggctagcctccactcccctgtttcatgtgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space:   484176
Effective search space used:   484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)