Query= MSMg01no428_b24.b1 MSMg01no428_b24.b1 CHROMAT_FILE:
MSMg01no428_b24.b1 PHD_FILE: MSMg01no428_b24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:12 2005
(536 letters)
>mm_chr2_85082563_85083498
Length = 936
Score = 946 bits (489), Expect = 0.0
Identities = 522/533 (97%), Gaps = 2/533 (0%)
Strand = Plus / Plus
Query: 5 gaattcagttctttgactatgactatgtgtggatttcattgtgtttatcatatttagcac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagttctttgactatgactatgtgtggatttcattgtgtttatcatatttagcac 264
Query: 65 atgttgagagatttttaacctatcacttctt-aaaaatgctttctattcgtcattttatc 123
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 265 atgttgagagatttttaacctatcacttcttaaaaaatgctttctattcgtcattttatc 324
Query: 124 tccttatagatttccactgtaccttcgaatagagaacagcgctgctgtgccctgatatct 183
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 325 tccttatagattt-cactgtaccttcgaataaagaacagcgctgctgtgccctgatatct 383
Query: 184 tagtacatgctctgatggtccatgtaatggttgatattgccaacttgacaggattcagaa 243
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 384 tagtacatgctctgatggtccatttaatggttgatattgccaacttgacaggattcagaa 443
Query: 244 tcttttatgagatgacgcactgggcatttctgtgagggatttttgcagattggttaattg 303
||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 444 tcttttacgagatgacgcattgggcatttctgtgagggatttttacagattggttaattg 503
Query: 304 aaacaggaacagctctgttctaccattctatgagttggtgttctggagtgaattaaaagg 363
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 504 aaacaggaacagctccgttctaccattctatgagttggtgttttggagtgaattaaaagg 563
Query: 364 agaaaaggagttgaacaccagcactcatttctctttgctttctgactgtggatacagtat 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agaaaaggagttgaacaccagcactcatttctctttgctttctgactgtggatacagtat 623
Query: 424 aacttaccaccatgacttctctgccaggattgattttcattcttccctaagttgcttctg 483
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aacttaccaccatgacttctctgccaggattgattttcattcttccctaagttgcttcta 683
Query: 484 gtcagctatttggttatagaaataagagaagtgactaatgtaggctctctaag 536
|||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 684 gtcagctatttggttatagaaataagagaagtgactaatgtaggctctgtaag 736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space: 487076
Effective search space used: 487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no428_b24.g1 MSMg01no428_b24.g1 CHROMAT_FILE:
MSMg01no428_b24.g1 PHD_FILE: MSMg01no428_b24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:13 2005
(540 letters)
>mm_chr2_85231963_85232905
Length = 943
Score = 1023 bits (529), Expect = 0.0
Identities = 537/541 (99%), Gaps = 3/541 (0%)
Strand = Plus / Minus
Query: 3 tatcatgtcattagtaaccgaccttctgcagaagaagacataaagacattttactcaaac 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 943 tatcatgtcattagtaaccgaccttctgcagaagaagacataaagacattttactcaaac 884
Query: 63 tctctccagtatggcttgaagatttgtcagcattgttactatccacatatccatcatgag 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 883 tctctccagtatggcttgaagatttgtcagcattgttactatccacatatccatcatgag 824
Query: 123 ctggggaaggccaacccttatcactatctgtataagcctaaagttgttcagtcactatgg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 ctggggaaggccaacccttatcactatctgtataagcctaaagttgttcagtcactatgg 764
Query: 183 aaattggtgtggaggtttctgctagagctgaatctctagtgccacaccaactctacctaa 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 aaattggtgtggaggtttctgctagagctgaatctctagtgccacaccaactctacctaa 704
Query: 243 tgcctttatatttagatcttacattcacataatttcagaatttcatggttttttaaatat 302
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 tgcctttaaatttagatcttacattcacataatttcagaatttcatggttttttaaatat 644
Query: 303 ctggatctaaacacagcttcttaatcctgtatttagaatgatgcccgacctgacttgtaa 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 ctggatctaaacacagcttcttaatcctgtatttagaatgatgcccgacctgacttgtaa 584
Query: 363 caggaaaagcaaataattgttaaataaaagcagcagaacaaaaacaagc---aaaaaaaa 419
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 583 caggaaaagcaaataattgttaaataaaagcagcagaacaaaaacaagcaaaaaaaaaaa 524
Query: 420 tccataatgaaaataacaggaaaaatgacctctctaataatttaaaatttattctgcaaa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 tccataatgaaaataacaggaaaaatgacctctctaataatttaaaatttattctgcaaa 464
Query: 480 tgcaacttataaaattaatgtatgagattgtatctcagcccttgaaacctcaagtttaag 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tgcaacttataaaattaatgtatgagattgtatctcagcccttgaaacctcaagtttaag 404
Query: 540 g 540
|
Sbjct: 403 g 403
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 943
Length adjustment: 10
Effective length of query: 530
Effective length of database: 933
Effective search space: 494490
Effective search space used: 494490
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
