Query= MSMg01no428_m18.b1 MSMg01no428_m18.b1 CHROMAT_FILE:
MSMg01no428_m18.b1 PHD_FILE: MSMg01no428_m18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:05 2005
(371 letters)
>mm_chr2_41891927_41892699
Length = 773
Score = 634 bits (328), Expect = 0.0
Identities = 362/380 (95%), Gaps = 16/380 (4%)
Strand = Plus / Plus
Query: 1 tagtgttggaagttccactaaacatgagctgttcacagtcccagtagctactt-gcaaag 59
||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||
Sbjct: 201 tagtgttggaagttccactaaacatgaactgttcacagtcccagtagcta-ttagcaaag 259
Query: 60 cctgtgtctagcatgttcatacaatttttgttggtggtgaaaacggctgtgtcaaatttc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 cctgtgtctagcatgttcatacaatttttgttggtggtgaaaacggctgtgtcaaatttc 319
Query: 120 atttctttgtcccctttgatttataaacaatcacacatccagagtgaaaaaaaaa--ccc 177
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 320 atttctttgccccctttgatttataaacaatcacacatccagagtgaaaaaaaaaaaccc 379
Query: 178 tcaaactacaattgtaattctcagccttgactattcaataatacacatgctgtgagtgtt 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tcaaactacaattgtaattctcagccttgactattcaataatacacatgctgtgagtgtt 439
Query: 238 agaattcaaactttttta---tc---tcaattcctctttgaaatctctctagcatggagc 291
||||||||||| | || ||||||||||||||||||||||||||||||||||
Sbjct: 440 agaattcaaac------aaaatcaactcaattcctctttgaaatctctctagcatggagc 493
Query: 292 tatctcagaggagttatgtggtaaaaacaaaaacacatatgatattactctcatgaatgc 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tatctcagaggagttatgtggtaaaaacaaaaacacatatgatattactctcatgaatgc 553
Query: 352 aatattctagcatatataca 371
||||||||||||||||||||
Sbjct: 554 aatattctagcatatataca 573
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 773
Length adjustment: 9
Effective length of query: 362
Effective length of database: 764
Effective search space: 276568
Effective search space used: 276568
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no428_m18.g1 MSMg01no428_m18.g1 CHROMAT_FILE:
MSMg01no428_m18.g1 PHD_FILE: MSMg01no428_m18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:05 2005
(524 letters)
>mm_chr2_42044540_42045463
Length = 924
Score = 924 bits (478), Expect = 0.0
Identities = 518/546 (94%), Gaps = 24/546 (4%)
Strand = Plus / Minus
Query: 1 tcaattctctgctccataagctctaaacagattcaattaaaaatgggtaagagttataat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 tcaattctctgctccataagctctaaacagattcaattaaaaatgggtaagagttataat 794
Query: 61 gaaagttcagtcataaaaatatgtatcagaggcaggcgggtttctgagtttgatgccagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 gaaagttcagtcataaaaatatgtatcagaggcaggcgggtttctgagtttgatgccagc 734
Query: 121 ctggtctacaaagtgagttccaggacagccgggtctacacaaagaaaccctgtctcaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 ctggtctacaaagtgagttccaggacagccgggtctacacaaagaaaccctgtctcaaaa 674
Query: 181 aacc----------------------agaaaaaaaaaaattaaaaaaaatttaaaaaaaa 218
|||| | ||||||||||| |||||||||||||||||||
Sbjct: 673 aaccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa--aaaaaaaatttaaaaaaaa 616
Query: 219 agtaaaatgaaaaaaaaaaagaaaacaaatctatgtataatttaccttaatttctttgaa 278
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 615 agtaaaatgaaaaaaaaaaagaaaacaaacctatgtataatttaccttaatttctttgaa 556
Query: 279 gtgataacatcactgttatcaagtcaagatgctaagaacaaatacgtagatgtgatgtct 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 gtgataacatcactgttatcaagtcaagatgctaagaacaaatacgtagatgtgatgtct 496
Query: 339 aaaagtactttaaacattctgtcaaggtactttaagtataatgaaacataaataataaaa 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 aaaagtactttaaacattctgtcaaggtactttaagtataatgaaacataaataataaaa 436
Query: 399 ataattatttgtagtacacatcaatgtatattatttacctaaaaacttccaatcactaaa 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ataattatttgtagtacacatcaatgtatattatttacctaaaaacttccaatcactaaa 376
Query: 459 actgaaaaaaaaaatctctactgaaaaattgcaagagaaatgtgggtgtgctaagttgtt 518
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct: 375 actgaaaaaaaaaatctctaccgaaaaattgcaagagaaatgtgggtgtgttaagttgtt 316
Query: 519 tgacaa 524
||||||
Sbjct: 315 tgacaa 310
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space: 469796
Effective search space used: 469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
