BAC Information

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BAC

Clone NameMSMg01-429M04
Chromosome2 (Build37)
Map Location 155,392,701 - 155,557,145
singlet/doubletdoublet
Overlap geneGss, Myh7b, Trpc4ap, Edem2
Upstream geneE2f1, Pxmp4, Zfp341, Chmp4b, LOC668936, LOC435692, Raly, Eif2s2, a, Ahcy, Itch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2
Downstream geneProcr, Mmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik, Gdf5, Cep250, Ergic3, Fer1l4, Spag4, Cpne1, Rbm12, Nfs1, 2010100O12Rik, Rbm39, Phf20, Scand1, LOC632394, LOC628707, LOC669792, 2900097C17Rik, LOC668941, Epb4.1l1, 0610011L14Rik, Dlgap4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429M04.T7 (MSMg01no429_m04.b1)MSMg01-429M04.TJ (MSMg01no429_m04.g1)
ACCAG522413AG522414
length742731
length of high quality
(start - end)		471 (65 - 535)197 (120 - 316)
definitionCHROMAT_FILE: MSMg01no429_m04.b1 PHD_FILE: MSMg01no429_m04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:20 2005CHROMAT_FILE: MSMg01no429_m04.g1 PHD_FILE: MSMg01no429_m04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,556,735 - 155,557,145)(155,392,701 - 155,392,897)
sequence
CGGCCGCTAAACGACTCACTAAATACTGAGCGAGGGCGGAATTCCAGAAA
ATGCCGAAAAAGTTCTCTTGCTTTAAGCTTCCATGTTGGTGATAATTTGT
TCTAGTAGCTTGGGAAACCTATACAGTCTCCCTGTGTTATTATCCAGGTC
TTAGTTTCTTTTGGTTTCCCTTCTATCTGGCCCCTCTAAGAAGTATTTAA
AAAATATTCTCCTAGTGACTCAGTATTTGCTATGCCATTATTATAGGCAT
TTTATATGGTTCACTGAATCCTCTAACCCTATTAAGCAGGTATTAATATT
CTTCATTATTTATAAATGAGAAAAAAAGGTGAGGCCACACTCCTAATAAT
ACTGCCCCAATTTAACACTGACACATTGACCCTTGACCCATCTATACTAA
AACCTTTTTATTGAATTTAGGACCCACTTTGGGTTAGATATGGAGTTTAA
TTTGTTTATCAACTGATGGCACTTTGGGACACTTAATGAGGGATATTTTC
AAGAATGCTGGATTGGGATTGGAGAGATGGATCAATGGTTAAGAGTACTA
ACTACTCTTCTAGAGCACCTGGGTTGAGTCTTACCACCACATGGAAGCTC
ACAATACCTATAATTCTAGACCCAGAGGACTCTACACCCTTTTCTGGCCT
CAGAGGCGACCTGTCATGCACAAAATTATGTACCAAATCCTTTTGTACAT
AACCCAGTAATATTATTGTGCGCTCCCAACTTGCTTATCACN

ATGAAGTGTGTAGGCCTGGNGGNCGCCTGGTTCACAACATGAGGTGACCT
ATAGAAGTACCAGAGAGAATTCAGTCTATAGGTCCTGCTGGTCATGCAGA
GTGACTTCCAGGGTTGGCCGGAACAGAAGGGAAAACACCATAAATTCCTT
TAGGCTAGACACTTCAATCCAGATGTGACCCTTAACTCCCTTGCAGCACT
AAATACCAAACAGGCTTTCAGTACTACAGCAAAGGCCTGGAAAGTGGCTA
TAGATATACCCTAATTCTCTCTACTCTCCAGTCATTTCCTTTGGTTTTCA
TCCTTATCATCACCATTTTTTATGGAGCTGAAATGGATTTTTAGCCCCCC
AAGTTTTATCTCCTGCTGTGGCGGTTTGAATATGCTTGGCCCACGGAATG
TCATGACTAGTAGGTGTGGTCTTGTTGGAGCACGCGTGGCCCTGTTGTAC
AAAGCTGCGTCACCGCGCGCCGTGGGCCTTGATACCCTCCCCTCATTTGT
TCACGACTTACTCCTCTTTTTCCTGAACGCTCTGAATCAAGATGTAGAAT
TCTCCGCCCGTTCTCCACACTTCATGTCTGTTTTGCCACCCCCCCCGTTC
TTACCCTTCACCGACCCGGACTTTATCCCTTTTTCCCCCCCCCCCTTTTC
TTGTTCGTCTTTTTCTAACATACTCCCCGTCCCCCCCCTTTTTCCCCCCT
CCCCCACCTCTCCCTTTCACCCCCCCCCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_m04.b1 MSMg01no429_m04.b1 CHROMAT_FILE:
MSMg01no429_m04.b1 PHD_FILE: MSMg01no429_m04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:20 2005
         (471 letters)



>mm_chr2_155556275_155557145
          Length = 871

 Score =  787 bits (407), Expect = 0.0
 Identities = 410/411 (99%)
 Strand = Plus / Minus

                                                                       
Query: 61  agtctccctgtgttattatccaggtcttagtttcttttggtttcccttctatctggcccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 agtctccctgtgttattatccaggtcttagtttcttttggtttcccttctatctggcccc 812

                                                                       
Query: 121 tctaagaagtatttaaaaaatattctcctagtgactcagtatttgctatgccattattat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 tctaagaagtatttaaaaaatattctcctagtgactcagtatttgctatgccattattat 752

                                                                       
Query: 181 aggcattttatatggttcactgaatcctctaaccctattaagcaggtattaatattcttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 aggcattttatatggttcactgaatcctctaaccctattaagcaggtattaatattcttc 692

                                                                       
Query: 241 attatttataaatgagaaaaaaaggtgaggccacactcctaataatactgccccaattta 300
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 ataatttataaatgagaaaaaaaggtgaggccacactcctaataatactgccccaattta 632

                                                                       
Query: 301 acactgacacattgacccttgacccatctatactaaaacctttttattgaatttaggacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 acactgacacattgacccttgacccatctatactaaaacctttttattgaatttaggacc 572

                                                                       
Query: 361 cactttgggttagatatggagtttaatttgtttatcaactgatggcactttgggacactt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 cactttgggttagatatggagtttaatttgtttatcaactgatggcactttgggacactt 512

                                                              
Query: 421 aatgagggatattttcaagaatgctggattgggattggagagatggatcaa 471
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 aatgagggatattttcaagaatgctggattgggattggagagatggatcaa 461


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space:   396921
Effective search space used:   396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no429_m04.g1 MSMg01no429_m04.g1 CHROMAT_FILE:
MSMg01no429_m04.g1 PHD_FILE: MSMg01no429_m04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:21 2005
         (197 letters)



>mm_chr2_155392501_155393097
          Length = 597

 Score =  373 bits (193), Expect = e-108
 Identities = 196/197 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggaacagaagggaaaacaccataaattcctttaggctagacacttcaatccagatgtgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggaacagaagggaaaacaccataaattcctttaggctagacacttcaatccagatgtgac 260

                                                                       
Query: 61  ccttaactcccttgcagcactaaataccaaacaggctttcagtactacagcaaaggcctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccttaactcccttgcagcactaaataccaaacaggctttcagtactacagcaaaggcctg 320

                                                                       
Query: 121 gaaagtggctatagatataccctaattctctctactctccagtcatttcctttggttttc 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaagtggctacagatataccctaattctctctactctccagtcatttcctttggttttc 380

                            
Query: 181 atccttatcatcaccat 197
           |||||||||||||||||
Sbjct: 381 atccttatcatcaccat 397


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 197
Length of database: 597
Length adjustment: 8
Effective length of query: 189
Effective length of database: 589
Effective search space:   111321
Effective search space used:   111321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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