BAC Information

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BAC

Clone NameMSMg01-429P19
Chromosome2 (Build37)
Map Location 49,609,466 - 49,781,192
singlet/doubletdoublet
Overlap geneKif5c, 2310010M24Rik
Upstream geneLOC383692, Acvr2a, Orc4l, LOC100041508, Mbd5, LOC100042719, LOC666709, LOC435666, Epc2
Downstream geneLypd6, 2010311D03Rik, LOC666781, LOC227885
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429P19.T7 (MSMg01no429_p19.b1)MSMg01-429P19.TJ (MSMg01no429_p19.g1)
ACCAG522587AG522588
length767760
length of high quality
(start - end)
408 (39 - 446)401 (73 - 473)
definitionCHROMAT_FILE: MSMg01no429_p19.b1 PHD_FILE: MSMg01no429_p19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:37 2005CHROMAT_FILE: MSMg01no429_p19.g1 PHD_FILE: MSMg01no429_p19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,780,791 - 49,781,192)(49,609,466 - 49,609,741)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTC
CTGACTATTACCAATCCCTCAGACCTCTGGGAGTTGGCAAAGCCTTCCTG
CAGTCTGACCACAAGTGTTCCATTGACCATTGAATGTAAAAATTAGCTAT
ATATACCAAAAGTCCGAGGTATGGGTTGTTTTGCTTGGTGCCCTTGGTCA
GAGTGAGCACAGCCGTCTCATCCCCTCTCATCCCCAGCTTCCCTGTATGT
ATGTCTGTCCTTCCTCATTCTTTCATCACCTCAGTCAGGCTTTCCAGGAC
TGAGCCATACTGATCATGACATAGAAGAGTGATTTCTCTTTTACTCCTTG
AAATATTGGAAATAGCTCAATATCTCCTCTGACTATAATCGAGGTTCTGA
GGTCCACTTCTGCAGGCAAGAGGAGGAGGCCTGAAATCCCTCACCTGGAC
CCTCAGCAAACAAACTCCACATTTAAAACCTGGCCTAAAGGCAAAGAGAC
GCAGTGGGCCTTTGTACACTTGTGGTAAGGGTGAAAAGACCTCTTGTTAA
TGAAAAAGATAAACGTTTCTTCTGTTGCTTCCTCACTAGAGAGGCCTAGC
TTGGCCCCGTTTATGGTGCCTTCCTTTCTTCCTCTGGAAAAAGGCCTAAT
AAAAAAAAATAATGCCTCCCCCCGGGTGGGGCTATTTTTTTCCCCCCCCT
CATAAATATCGCCTCTAAAAAATAAAAAAACCCTCTCATCGCCTCTCCTC
CTCATGCCTAATCCTGA
ATATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAAGGAATATTTATTAGAAGCCAAATCTT
CCAGGCATGGAGCTGCTGCTGGCACAAGCAAAATAGGTCAGAACAGCCGT
AGCTCGCCTTGATAAAGCTTTTTCTGATTTTTGACCCTTTCCCTGATCCA
TCTGGATTCCAACAATTGTAATTGTAGTTTAAGTGCAAAACCCTGGGTAC
TGGCTGAAACCAGGCTTGTGGCTACTTTGTGGGTTCTTTTTTCTTTCACC
CTTTCAGCCCCCTAATACTATATGGGAGAGAAGAAAGGATAGAGGGGACC
TGGGACCCCAGCCTCTGGGATGACTCTCTCCACGTTCAGGATGGAGCATG
GAGAGAGTCCCTCCCTCCATTAAACTACTTTGGAAATGTCCTCAGAGACG
TATAACTTACCTTGTATGTGCTTCTAAATTGGGTTGCGTTGACAATGACA
GTGAACTACTGCCAACTTCCCGTGAAGCGCCCATACTGTTCAATGGGAGA
ACTTCCCCAGTGACTGCCCCCCCATGATCCTTTTTTTTTATGGCGGGCAC
CTCCCCTACTCCGAAGGGTTTCCCCTTTTTTCCCTTTTTTCCATGTCCCC
ACCCGCTCTCCTTCGCCTTTTAGCCCCTCCCTTTTCCAAGCGCCTTAATT
AACACGTAACCCATACCCCCCCCCCCTTCTTTTTTTCTTCCCCTCTTTTT
TTTCTCACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_p19.b1 MSMg01no429_p19.b1 CHROMAT_FILE:
MSMg01no429_p19.b1 PHD_FILE: MSMg01no429_p19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:37 2005
         (408 letters)



>mm_chr2_49780585_49781392
          Length = 808

 Score =  739 bits (382), Expect = 0.0
 Identities = 397/402 (98%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcctgactattaccaatccctcagacctctgggagttggcaaagccttcctgcagt 66
           ||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gaattcctgacaaagaccaatccctcagacctctgggagttggcaaagccttcctgcagt 549

                                                                       
Query: 67  ctgaccacaagtgttccattgaccattgaatgtaaaaattagctatatataccaaaagtc 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ctgaccacaagtgttccattgaccattgaatgtaaaaattagctatatataccaaaagtc 489

                                                                       
Query: 127 cgaggtatgggttgttttgcttggtgcccttggtcagagtgagcacagccgtctcatccc 186
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 cgaggtattggttgttttgcttggtgcccttggtcagagtgagcacagccgtctcatccc 429

                                                                       
Query: 187 ctctcatccccagcttccctgtatgtatgtctgtccttcctcattctttcatcacctcag 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ctctcatccccagcttccctgtatgtatgtctgtccttcctcattctttcatcacctcag 369

                                                                       
Query: 247 tcaggctttccaggactgagccatactgatcatgacatagaagagtgatttctcttttac 306
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tcaggctttccaggactgaaccatactgatcatgacatagaagagtgatttctcttttac 309

                                                                       
Query: 307 tccttgaaatattggaaatagctcaatatctcctctgactataatcgaggttctgaggtc 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tccttgaaatattggaaatagctcaatatctcctctgactataatcgaggttctgaggtc 249

                                                     
Query: 367 cacttctgcaggcaagaggaggaggcctgaaatccctcacct 408
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 cacttctgcaggcaagaggaggaggcctgaaatccctcacct 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 808
Length adjustment: 9
Effective length of query: 399
Effective length of database: 799
Effective search space:   318801
Effective search space used:   318801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no429_p19.g1 MSMg01no429_p19.g1 CHROMAT_FILE:
MSMg01no429_p19.g1 PHD_FILE: MSMg01no429_p19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:37 2005
         (401 letters)



>mm_chr2_49609266_49610066
          Length = 801

 Score =  472 bits (244), Expect = e-137
 Identities = 268/276 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggaatatttattagaagccaaatcttccaggcatggagctgctgctggcacaagcaaa 60
           ||||||||||||||| ||||||| |||||||||||||||||| ||||||||| |||||||
Sbjct: 201 aaggaatatttattaaaagccaagtcttccaggcatggagctactgctggcataagcaaa 260

                                                                       
Query: 61  ataggtcagaacagccgtagctcgccttgataaagctttttctgatttttgaccctttcc 120
           ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 261 ataggtcagaacagccgtagctcgctttgataaagctttttctgatttttgatcctttcc 320

                                                                       
Query: 121 ctgatccatctggattccaacaattgtaattgtagtttaagtgcaaaaccctgggtactg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgatccatctggattccaacaattgtaattgtagtttaagtgcaaaaccctgggtactg 380

                                                                       
Query: 181 gctgaaaccaggcttgtggctactttgtgggttcttttttctttcaccctttcagccccc 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctgtaaccaggcttgtggctactttgtgggttcttttttctttcaccctttcagccccc 440

                                               
Query: 241 taatactatatgggagagaagaaaggatagagggga 276
           |||||||| |||||||||||||||||||||||||||
Sbjct: 441 taatactagatgggagagaagaaaggatagagggga 476


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 801
Length adjustment: 9
Effective length of query: 392
Effective length of database: 792
Effective search space:   310464
Effective search space used:   310464
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)