BAC Information

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BAC

Clone NameMSMg01-430I04
Chromosome2 (Build37)
Map Location 123,641,118 - 123,641,536
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream gene4930517E11Rik, LOC100043360, Sema6d, LOC100043367, LOC100043369
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-430I04.T7 (MSMg01no430_i04.b1)MSMg01-430I04.TJ (MSMg01no430_i04.g1)
ACCAG522988AG522989
length770829
length of high quality
(start - end)
408 (73 - 480)244 (80 - 323)
definitionCHROMAT_FILE: MSMg01no430_i04.b1 PHD_FILE: MSMg01no430_i04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:23 2005CHROMAT_FILE: MSMg01no430_i04.g1 PHD_FILE: MSMg01no430_i04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AGGTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCG
CGGAATTCAAAATATTTTCCATTGCTTGGAAAGAAATCTAGCAATAACTT
TAAAGTGAATTTACTTGGCCTGCCCAGAAGCCAGAGGCAAACCCACCATA
GATATTAACCAGAGAAACAAAAAAGACATATCTCAACACAGACACTTACA
TATGAGTTATGTTAGAAACTTTATTCATTATCACCAAGAGAGGGAAATGC
AGCTGTGCCGGTCAGCTGGGAATCAGTTTACTTGATTATAATGCATCCAC
ACAGTGCAAGTCTACCCAGTGATAAATATTAAAGTCACAGGAAAAAAAAA
GATTCACAAGCATTATGGTAAAATCACTGAGACTCCCCTTCAGTGCCACC
ATCCCAAACACACACACACACAAAAGTGCACACATTTGCCCCAGCTTACA
TGAATCCTGCAGAAGTAAACTTTGATGAAAGAAGTCAGGAAAATGGCTGC
CATTGGCTGGACTACGGAAGGTCCCGTATCCCATGAGAAAGGTAAAGCTT
GTGGGCCCTTCCGGATCAAGACTACAAAGGCACTTCTATAACACATGACT
GTGAGAATTCCCAACCTTATGCCTGGCACCCCTATACTTTACTTTATGTA
AACTACTTTCTGATCACTATGTCTATATTACCATTTGTTGTTTCCCTCTT
TTCTCCACTTGGTCGCCTCCCCCTTTCCTCCGCAAGGTGCTATGAAATCT
GCCCATTTCCCCTACTCTAA
CCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGCTGACAACATCCGTGTA
TTGGTCTGCCTTATACTGTGCAGTTGAGTTGCGTTTACTGGGATTCCATA
GAGAGAAACACACCAAAAACTTCTGGTGGTGTGCTGCAGTTTCTTGATGC
TTTTTGAGACTTGTGTTGGCAGAATGATGTCAGCTGGGACAGGTTCATGT
GCTGAGGCAAGACTTGTGGAGGACACATGATGTTTCGAGGGTATAAATAG
AACTTCATGGACAGGGAGGGAGCATATATTTAGCTGTGCAAAGCTTGTTG
GTCTTGAGTCTTCCCTGATAGTAGCACAGTCAAGAAAGGCCTGGATGTCT
CTGTTATGCTATGTCTTTGTTGTTGCCAATCTGGTTCTTTCTGTCCTGTC
CACGTTGTATTTCTTTGTTCTTTTTCTATTTTTTTTTTTCCCCCCTCTTT
CTCTCTTTTCATTTTTATTTTTGTGATTACCCTTCCTCCCTTTCCCCCCA
TTCTTTTATCTCTACTCTTTTACATCCTATATTATCTACTTTTCCATTAA
CTTCCATTCTACTTTCTTTTCTTTTCTTACACCTCCTATCTACTACCCAC
TCCATAATTCTACCTCCTCCCCCAATTTTTCCTTTCCCCCCTCCCATTCT
TTAATTTCTACCCCCAATTTTTCTTTTATTCTTTTATTACATTTTTGTCC
CTTTTCTTTTCTCCCTTCCTTCCTCATTTTTCTCTATTATACACCCCTCA
TCCCATCTCTAATTCCTCTTCTCTATTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no430_i04.b1 MSMg01no430_i04.b1 CHROMAT_FILE:
MSMg01no430_i04.b1 PHD_FILE: MSMg01no430_i04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:23 2005
         (408 letters)



>mm_chr2_123640918_123641726
          Length = 809

 Score =  627 bits (324), Expect = 0.0
 Identities = 392/420 (93%), Gaps = 13/420 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcttggaaagaaatctagcaataactttaaagtgaatttacttggcctgcccagaagcc 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 tgcttggaaagaaatctagcaataactttaaagtgaattcacttggcctgcccagaagcc 260

                                                                       
Query: 61  agaggcaaacccaccatagatattaaccagagaaacaaaaaagacatatctcaacacaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaggcaaacccaccatagatattaaccagagaaacaaaaaagacatatctcaacacaga 320

                                                                       
Query: 121 cacttacatatgagttatgttagaaactttattcattatcaccaagagagggaaatgcag 180
           |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct: 321 cacttacatatgagttatgttagaaactttattctttatcaccaaga-agggaaatgcag 379

                                                                       
Query: 181 ctgtgccggtcagctgggaatcagtttacttgattataatgcatccacacagtgcaagtc 240
           ||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||| |
Sbjct: 380 ctgtgcctgtcagctggcaatcagtttgcttgattataatgcatccacacagtgcaagcc 439

                                                                       
Query: 241 tacccagtgataaatattaaagtcacaggaaaaa-aaa-agattcacaagcattatggta 298
           | ||||||||||||||  |||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 440 tgcccagtgataaatagcaaagtcacaggaaaaagaaatagattcacaagcattatggta 499

                                                                       
Query: 299 aaatcactgagactccccttcagtgccaccatcccaaacacacacacacaca-a------ 351
           ||||| |||||||||||||||||||  ||||||||| ||||||||||||||| |      
Sbjct: 500 aaatctctgagactccccttcagtgttaccatcccacacacacacacacacacacacaca 559

                                                                       
Query: 352 ---aagtgcacacatttgccccagcttacatgaatcctgcagaagtaaactttgatgaaa 408
              |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 560 cacaagtgcacacatttgccccagcttacatgaatcctgtagaaggaaactttgatgaaa 619


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 809
Length adjustment: 9
Effective length of query: 399
Effective length of database: 800
Effective search space:   319200
Effective search space used:   319200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)