BAC Information

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BAC

Clone NameMSMg01-431F20
Chromosome2 (Build37)
Map Location 91,292,878 - 91,293,305
singlet/doubletsinglet
Overlap genenone
Upstream genePtprj, 4933423P22Rik, Nup160, Fnbp4, Rpl30-ps3, Agbl2, Mtch2, C1qtnf4, Ndufs3, Kbtbd4, Ptpmt1, Cugbp1, LOC279067, Rapsn, Psmc3, Slc39a13, Sfpi1, Mybpc3, Madd, Nr1h3, Acp2, Ddb2, Pacsin3, Zfp289, 1110051M20Rik
Downstream geneLrp4, LOC619941, Ckap5, F2, Zfp408, Arhgap1, D2Ertd391e, LOC100043179, D230010M03Rik, D030051N19Rik, Chrm4, Mdk, Dgkz, Creb3l1, Phf21a, Gyltl1b, Pex16, 1700029I15Rik, Mapk8ip1, Cry2, Slc35c1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431F20.T7 (MSMg01no431_f20.b1)MSMg01-431F20.TJ (MSMg01no431_f20.g1)
ACCAG523640AG523641
length828781
length of high quality
(start - end)		236 (35 - 270)428 (64 - 491)
definitionCHROMAT_FILE: MSMg01no431_f20.b1 PHD_FILE: MSMg01no431_f20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:38 2005CHROMAT_FILE: MSMg01no431_f20.g1 PHD_FILE: MSMg01no431_f20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGGAATTCCTCCT
GGATCTGTGAGCCCAAATGACCCTTTATCCTTAAAGTTCCTTTTTCAGAG
TATTTTGGGTTTTGATTTTTTTTTGTTTTTGTTTATTTATGTGCTTGGTA
TTTTGCCTGAATTTATATCTGTGTGAGGGTGTCAGGTCCTCTGGAACTGA
AGTCACAGACAGTTGTGAGCTACTATGAGGGTGCTGGGAATTGAACCTGG
ATCCTCTAGAAGAGCAGNCAGNGCTCTTANCCANCGAGNCATCTCTCCAG
CCCCCTTTCCGTATTTTTTTTATCGCCGCCAAGAACAAGACATGAATATT
ATGTGTTTATTTCTCACGACGATCTCCCTTGCCTTTTACATATTGTTAGA
TTGTGAGCCGCCCCCTGCCACTTGTCGACCAGCCCCCTAACTGTCGCCGC
CCATTGTGTAATTGACCAGACGGCCACGACCCTCCCACTGCGTCNTTTTT
TCTCCCCTACTGACTTCCTTTCTCTTTCTTTTTCTTTTTATTCTTCTTCT
CACCCCCCTCCCTCTGTCTTTTTTCCCTTTGCTCGCCCTGCTTACTTTAC
CCTCTCTTGCTCTTCCTCTTCCACTCCCCCTACTCCCTTCTCCTCTTTCC
TTCCTCATCCCTCTCTCCATCTTCTTTTTCTCCCTCCCTCCCCTCCTTCT
TTTTCTTTTTTTCCCGCTCCACTTTTCTTCCAATACTCCTCCTCTTTTTC
TCATTCCACCTTCTTCCCCGCTTNCTTTCTACTTACTTTTCCCATCCTGT
CCCCTTTTTTCCTCTCTCCCATTTTCAT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXATCATGAAACCAAAGATGACTTTGAACTCCTAATTCT
CCTGCCTCCACCTCCTGTGAGTGCTGGGATTACAGACATGTGCCACCATG
TCCAATTTCAGCTTCTGTGCTTTCTGGCATCAGTTCCAGCGCCCACATTT
TTTCCCCCTAGCTCAGCAGTGAAACTTGAGCCAGGACCTGGGGCATATGA
CTGATTTTATACCCTAGCCTAACTTGGGGCACACCCTGAAAGGTGGGGCT
TTGCAGAACATTTTTATCTCCTGCAAGCTTGATAGTCACACACCTGACAC
AGATAGCTAGAGCCTTTGCAGAGAGGGGTTTGCTTATCGTAGCTACAAAG
ATAAACGTAGAGTGGCGGATGACTAGACCTACAAAGTGCTTGTTCACTAG
CAAATACAAGTCATAAAAATCCACGTGGATGGTGTCTGTTTTCACGAGCG
GCCCTTTAGAATTTATGCTCCGTGAAGCAACCATTTCCTAAAGCCCTCCC
TTTTCTTCTTGCCCGGCAAGGTTCTTCACTGAAAGCCCTCCTGGTCTCCC
CCCCCTCGGTCACTGGGGTCTCGGCACGAAGCCCTTTCCTTTAATTTTAA
AGAAGGCCACCCTTGGTGGCATAAAAATTTTTTAGAAATTGGGCTTTCTT
TCTCAGGTGGCCCCCTGTCACAAAAAAAGGCCTTGGTCTCTACTTCCAAA
ATTGCCCTCTTTTTCCCTCCAAATCTCTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_f20.g1 MSMg01no431_f20.g1 CHROMAT_FILE:
MSMg01no431_f20.g1 PHD_FILE: MSMg01no431_f20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:38 2005
         (428 letters)



>mm_chr2_91292570_91293397
          Length = 828

 Score =  804 bits (416), Expect = 0.0
 Identities = 425/428 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcatgaaaccaaagatgactttgaactcctaattctcctgcctccacctcctgtgagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 atcatgaaaccaaagatgactttgaactcctaattctcctgcctccacctcctgtgagtg 677

                                                                       
Query: 61  ctgggattacagacatgtgccaccatgtccaatttcagcttctgtgctttctggcatcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ctgggattacagacatgtgccaccatgtccaatttcagcttctgtgctttctggcatcag 617

                                                                       
Query: 121 ttccagcgcccacattttttccccctagctcagcagtgaaacttgagccaggacctgggg 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ttccagcgcccacattttttctccctagctcagcagtgaaacttgagccaggacctgggg 557

                                                                       
Query: 181 catatgactgattttataccctagcctaacttggggcacaccctgaaaggtggggctttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 catatgactgattttataccctagcctaacttggggcacaccctgaaaggtggggctttg 497

                                                                       
Query: 241 cagaacatttttatctcctgcaagcttgatagtcacacacctgacacagatagctagagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 cagaacatttttatctcctgcaagcttgatagtcacacacctgacacagatagctagagc 437

                                                                       
Query: 301 ctttgcagagaggggtttgcttatcgtagctacaaagataaacgtagagtggcggatgac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ctttgcagagaggggtttgcttatcgtagctacaaagataaacgtagagtggcggatgac 377

                                                                       
Query: 361 tagacctacaaagtgcttgttcactagcaaatacaagtcataaaaatccacgtggatggt 420
           |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 376 tagacctacaaagtgcttgttcaaaagcaaatacaagtcataaaaatccacgtggatggt 317

                   
Query: 421 gtctgttt 428
           ||||||||
Sbjct: 316 gtctgttt 309


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space:   343161
Effective search space used:   343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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