BAC Information

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BAC

Clone NameMSMg01-431I21
Chromosome2 (Build37)
Map Location 143,301,325 - 143,301,755
singlet/doubletsinglet
Overlap geneLOC668915
Upstream geneLOC668913, LOC668914, Kif16b, Snrpb2, Otor
Downstream geneLOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik, LOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431I21.T7 (MSMg01no431_i21.b1)MSMg01-431I21.TJ (MSMg01no431_i21.g1)
ACCAG523786AG523787
length777780
length of high quality
(start - end)		124 (336 - 459)431 (62 - 492)
definitionCHROMAT_FILE: MSMg01no431_i21.b1 PHD_FILE: MSMg01no431_i21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:55 2005CHROMAT_FILE: MSMg01no431_i21.g1 PHD_FILE: MSMg01no431_i21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCGGTT
TTATCTCTGATGCCATGCGCTCTACACTATGAAATACATTTGTTTGCTAC
AATAGGATGGACCGTTATCTGTCTTACTAAGATTAGGCAATCCCCTGCTA
TTACAGGCTTGTATGCTATGATCTGTTACATTTTTGGAGGCTTCTCACGT
ATGCTTAGAAACGAAAAGATCTCTTGAACGAGTATCAATACGAACATGTA
TATATTTTAATTTTCTAAATTCTGCATAATGAGTTACATCCATTTGCCAA
ATGTGATTAGGCATAAAATCTCATGAATTAACTAATCAATGTGGCACTGG
AGATAATGTAATACGTTTAGGACATTGTTTTGCAATCATTCTTGCCTGCT
CTCTAGTGATCTTATGTCGAAGCCTTAGGGTGTATGGCTAGAGAGATGAA
ATTTTTCATGATCACATTTGGCCAAAGCAATAGGATCTGACATTAAGGCT
TCTCCTATTAGAACTCTATCGATGCAATCATTGTCTGTAGCTAAAGGTCT
AGGAAGGCCAGAATGAATTCTTATGTGGGCCATATAGAACGCGTGTTTTC
CGGCACAATGATGTTTTTGCAATGTGAAAACCAGAATCCTGCTGGCAAAT
TAAAGTAAACTTCCCCACGGGCCCAAAAGGGGAACGAGATGGGCGCCTAT
TAATTTCCTTAAAATTTAAAACCCCGGGTTCAACCGGAAAAATCCCGAAT
TGTGGTATCTCTCCACTTGATTGAAAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXATAAGGAGAATTGTAGCTGGACATGGTGGCATGTATCTA
TCATCACAGTGCTAGGGAGGCAGCAATGGCAGCAATGATGGAGGAGGAAG
AGAAGGAAGAGGAAAGAAGGAAATACATATATAAACATACTGGGCTGTTG
AAGGGATAAGTCAGTGCAGTAGAGGAACCCTGGCTCCCAACACACAACCT
ATAGAGAGGAAAACATCGTGCCTTTGCACAACTGGAAGTATCTATCACAG
CCTAAGCATTTTACCTCTGTTCACTCTTTTGCCTACTAAATGTCCTCACC
AACCTTGTTCTATCACTGAAACTCCTGCAAAACTCTGTAAGAAACACAGC
CATGAATTCCAAATTAAGCGATCACATAGTCCACAGCTTTCCAAACATAT
TTCTACAGACTATATTGTTTTGCACCTCACAACTACTGTCCCAGCCACAT
GCAGTTATTTATCTTATACACATGAGGAAGCCCAGACTCAAAGGAGGCCA
GCCACCTGCCCCAGNTCACAGGCTTGGGAAGAAGCATATTCCTAAAAACC
TCCCGCCCGATTCCCTTTGTTTTTTCCACCGAGGAACAATGACGGGCCGG
GAGGGGCCCCACCCTTCTAACCGATTTTTTTCCCCCCAGGGAGCCCCACC
CCCTCAATGGTGGGGGGGCTTGTCCTACTTCCCACAAAACATTAATTTTT
ATACACTCAAAACCCTGCAGCTGGTGTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_i21.g1 MSMg01no431_i21.g1 CHROMAT_FILE:
MSMg01no431_i21.g1 PHD_FILE: MSMg01no431_i21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:55 2005
         (431 letters)



>mm_chr2_143301125_143301955
          Length = 831

 Score =  803 bits (415), Expect = 0.0
 Identities = 427/431 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataaggagaattgtagctggacatggtggcatgtatctatcatcacagtgctagggaggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataaggagaattgtagctggacatggtggcatgtatctatcatcacagtgctagggaggc 260

                                                                       
Query: 61  agcaatggcagcaatgatggaggaggaagagaaggaagaggaaagaaggaaatacatata 120
           ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcaatggcggcagtgatggaggaggaagagaaggaagaggaaagaaggaaatacatata 320

                                                                       
Query: 121 taaacatactgggctgttgaagggataagtcagtgcagtagaggaaccctggctcccaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaacatactgggctgttgaagggataagtcagtgcagtagaggaaccctggctcccaac 380

                                                                       
Query: 181 acacaacctatagagaggaaaacatcgtgcctttgcacaactggaagtatctatcacagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acacaacctatagagaggaaaacatcgtgcctttgcacaactggaagtatctatcacagc 440

                                                                       
Query: 241 ctaagcattttacctctgttcactcttttgcctactaaatgtcctcaccaaccttgttct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctaagcattttacctctgttcactcttttgcctactaaatgtcctcaccaaccttgttct 500

                                                                       
Query: 301 atcactgaaactcctgcaaaactctgtaagaaacacagccatgaattccaaattaagcga 360
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 atcactgaaactcctgcaaaactctgtaagaaacacagccacgaattccaaattaagcga 560

                                                                       
Query: 361 tcacatagtccacagctttccaaacatatttctacagactatattgttttgcacctcaca 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 561 tcacatagtccacagctttccaaacatatttctacagactatattgttttgcaccttaca 620

                      
Query: 421 actactgtccc 431
           |||||||||||
Sbjct: 621 actactgtccc 631


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 831
Length adjustment: 9
Effective length of query: 422
Effective length of database: 822
Effective search space:   346884
Effective search space used:   346884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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