BAC Information

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BAC

Clone NameMSMg01-431M12
Chromosome2 (Build37)
Map Location 53,968,827 - 54,154,609
singlet/doubletdoublet
Overlap geneLOC666913, LOC626563
Upstream geneFmnl2, Prpf40a, Arl6ip6, LOC666872, LOC666876, LOC207933, Rprm
Downstream geneLOC100041792, LOC100042878, Galnt13, LOC666936
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431M12.T7 (MSMg01no431_m12.b1)MSMg01-431M12.TJ (MSMg01no431_m12.g1)
ACCAG523960AG523961
length739842
length of high quality
(start - end)		248 (65 - 312)184 (61 - 244)
definitionCHROMAT_FILE: MSMg01no431_m12.b1 PHD_FILE: MSMg01no431_m12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:14 2005CHROMAT_FILE: MSMg01no431_m12.g1 PHD_FILE: MSMg01no431_m12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,154,363 - 54,154,609)(53,968,827 - 53,969,005)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTTAAAATTTCACATTGTAAACAAAGTCTTTCCCAGGAAATTTACATCAT
ATTGCAACCCAGATAACTGTTGTCTCTGGCTTCATTATGTCTTTCTCTCC
TCTCCAAAGCCTAGCTCTATCTACACTCTCTCTAATACTAAAGTAACTGA
ACACCTTGACTTAATTTACTTTCCTTAGTTGTCTGATTTACTTGTAACAA
ATTGTAATATCTTGATGTTCTCTTGAAATATCATGCCCCAAACCCTGTCT
TTGACCCTTATTNATTCAGTTATAGCATCTTAGACATCCTCTTCCTATTG
AACGTAGACTTTGTCTGATAAATGTTTTCTTTTATATTCTCTCATTATTT
TGTTGNCGCCCGCCCTTCTTTCAATTTTATTTTATCCGCATACTGTCCCT
ATGTCCATTTTCCCCCATCGATCTCATCCCTTCTCCTCTTTCTCTCGTCT
TACCCCTTTTTTCCTCTTTTCTCTCCCCTTCCCTCTTCCCTATTAAACTT
TATTTTCTTTTTTTTTCTCTCTCATTCCTTAATTTACTCCATTTTCCTTC
TCCTCCTCTACCCTTTCACTCTCCCTTTTTCCCCTCTCTTTTCCTTTTTT
TTTTTTTTCTTCCATCCCCCCCCCCTCTTCTCCCTTTTCTCTTTCCCCCA
CCCTATTTCTTTTTTCCCCTTTTCCTCTCTTCCCTTTTC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTCAGGAATTCTAGATTCTAATATGAATAAAAGAATATAA
GTTGGGAGGCAGAAGGCAGAAACGAGTCCCTTTGTACTTAAGCAGGTTTC
CAGGATGAGTGGAGTGTTGGTGCAGAAGACAGAGCGCCCTTACCTAGAGG
AATATTACCTAGGGATATTCCTTGGAGAGCTTTTATAGAGTAACGTATTT
TTTTTAAGGCTCTAAACAACCAGCTTACTAGACTGCGTATGTTTTCCACC
CCCCCACCCCCAATTTTCGTAGTTTCCCCCCGCCCCCTACAAGCCCATCC
GTATTGCTTCTTTTTTCCCCCCCCCTTTCCCCAGGGTTGACCTTTTATCC
CCCTTCCCTGCCATTCCCCCCCCCCCCTCTCTTTTTTTCTATGTTTTCTT
CTCTTTCCCCCTATCCTTTTTTTCCCTCCCCCTTTCTCCCCTCTTCTCCT
CGCCTCCGTTTTTCCCTTTCCTTTCTCTCTTTTCTTACTTTTCCCCTTTT
CTCTCTTCTCCTTTCTTTTCTCCCCTTTTTCACCCCTTCCCTTTTTCTCC
TCCTCTCCCCCTCTTTTCTCCCTCTTCCCCCTTTCCTTCCTTCCCTCTTC
TTCTCTTTCTTCCACCTCCTCCTTCCCTTCTCACTCTTCTTCTTTTCTTC
TCTTTCTCCTCCCCTTTTTTTTCTGTTTCTTTCTTCTTCTGCTCTATTCA
TCCCCCCCCTCCCCTCTCTCCTTCCTTCCCCCTTCTCTCCTCCTCGTCTC
CTTTTTTCCCTCTCTCCTTCTTTCTTTCTTCCCATTCCTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_m12.b1 MSMg01no431_m12.b1 CHROMAT_FILE:
MSMg01no431_m12.b1 PHD_FILE: MSMg01no431_m12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:14 2005
         (248 letters)



>mm_chr2_54154163_54154810
          Length = 648

 Score =  393 bits (203), Expect = e-114
 Identities = 236/247 (95%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgtaaacaaagtctttcccaggaaatttacatcatattgcaacccagataactgttgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 447 ttgtaaacaaagtctttcccaggaaatttacatcatattgcaacccaaataactgttgtc 388

                                                                       
Query: 61  tctggcttcattatgtctttctctcctctccaaagcctagctctatctacactctctcta 120
           |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 387 tctggcttcattatgtctttctctcctctccaaaacctagctctagctacactctctcta 328

                                                                       
Query: 121 atactaaagtaactgaacaccttgacttaatttactttccttagttgtctgatttacttg 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 327 atactaaagtaattgaacaccttgacttaatttactttccttagttgtctcttttacttg 268

                                                                       
Query: 181 taacaaattgtaatatcttgatgttctcttgaaatatcatgccccaaaccctgtctttga 240
            ||||||||||||||||||||||||||||||||||||||||  |||||||| |||| |||
Sbjct: 267 caacaaattgtaatatcttgatgttctcttgaaatatcatgttccaaacccagtctctga 208

                  
Query: 241 cccttat 247
           |||||||
Sbjct: 207 cccttat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no431_m12.g1 MSMg01no431_m12.g1 CHROMAT_FILE:
MSMg01no431_m12.g1 PHD_FILE: MSMg01no431_m12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:15 2005
         (184 letters)



>mm_chr2_53968623_53969206
          Length = 584

 Score =  323 bits (167), Expect = 4e-93
 Identities = 176/179 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggaattctagattctaatatgaataaaagaatataagttgggaggcagaaggcagaaacg 64
           |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
Sbjct: 205 ggaattctagattctaatatgaataaaataatataagttgggaggcagaaagcagaaatg 264

                                                                       
Query: 65  agtccctttgtacttaagcaggtttccaggatgagtggagtgttggtgcagaagacagag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agtccctttgtacttaagcaggtttccaggatgagtggagtgttggtgcagaagacagag 324

                                                                      
Query: 125 cgcccttacctagaggaatattacctagggatattccttggagagcttttatagagtaa 183
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cgcccttacctagaggaatattacctagggatattccttggagagcttttatagagtaa 383


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 184
Length of database: 584
Length adjustment: 8
Effective length of query: 176
Effective length of database: 576
Effective search space:   101376
Effective search space used:   101376
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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