BAC Information

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BAC

Clone NameMSMg01-431N11
Chromosome2 (Build37)
Map Location 68,152,505 - 68,281,287
singlet/doubletdoublet
Overlap geneStk39
Upstream geneCmya3, LOC621171, LOC227995, B3galt1
Downstream geneLOC100039683, Gm1323, 4933409G03Rik, 4932414N04Rik, LOC667443, Lass6, Nostrin, Spc25, G6pc2, Abcb11, Dhrs9, Lrp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431N11.T7 (MSMg01no431_n11.b1)MSMg01-431N11.TJ (MSMg01no431_n11.g1)
ACCAG524006AG524007
length752755
length of high quality
(start - end)
250 (66 - 315)436 (67 - 502)
definitionCHROMAT_FILE: MSMg01no431_n11.b1 PHD_FILE: MSMg01no431_n11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:20 2005CHROMAT_FILE: MSMg01no431_n11.g1 PHD_FILE: MSMg01no431_n11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,152,505 - 68,152,753)(68,280,852 - 68,281,287)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAATGCGCGGAATT
CCACAGAGTTACGATACAAGACAGCCAGTGGTGGCCGAGGGTGGTTACCT
TCTCTTGGGAGGCAGCTGCCTTCCCCTCCTCGCTCTTCTCATCCATCTCA
TCATCGCTCCACTCCCAGTCGCCGTCTTCAGTCTTATGAAGGTGACCGCT
CGACCCAGGAACTCGCCTTACCTGCACCAAAATAAGCCACACTTTCTAGG
TTGGGATGGACACAGCACTCACTGGTACTGCCACTCAGGTTATCCAGCAC
ACACAAGCCTCTGATGGTAACTCAAGAGGGTCTCAATCCACGGATAACTG
GAAGCTAACATACCAAAAGATAATACGCCTTAGACTTCCACCCTCAAATC
CTTCCAAAAATACTTTCTTGAAACACATTAGTATCACATATAGAACAACA
ACAACAAAAAAAAGTTTTTAAAGAATACCAAGCATGTGAACCATTAAAAA
AAAAAAAAAAAAAAAAAAGACTGCATTTTTCACTTTTACTTAAGCTAGAA
ACTTAGTTATCACACCAAGTCATGAGGCAAGTTTCAAAATTGCTAATGGA
AAAAGGCCCCATTGGCTGACATGCTACTAACTGTGCTAAGGGGAAAAAAA
TTTTTTCCTGGTGAACTGAAGCCAAAATGGGGCGGTTAAAACCTTATGCC
CCCAAGGAAACCGTTCCCCGGCGACCCTTGTCCTTTTTAAACCGGGAATA
AG
AGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTTTGCAGGTGGTTTGTCACAGCTGTTTTGGAGG
AGGTGATTGGCCACTTTATTAGATGGCTCGCTCCACCGCAAAAGGAGGCA
TTTTCTTTTGGACCATCAGACCCAGAAATTTCTTGCAGGAATTCCAAGGC
AATACTGAGACAGCCAAGCAAACACTGCTTTTGGTGAGCAGGCACATGTG
TGTTTCTGTCAAAATAAATTAAGTTAGAAATTCAGAAAATATTTTGTGAC
TTCTGTTCTAAGTATTTAACAAGTAGAATAAACATCCGGACACAAACAAC
ATCAAGTCTAAGGAAAACAAAAATAAAAAGCCAAGCCAGCCCTGAGACGG
CTGACAGATCCTCTTGCTGTTGGTCCAGGTTGTGCCACCTCTGGGTGGCT
GAGTCCTTGCTACAGTCCTCTCAGGGATCCCTCTTTCTCCATTTCCTTCC
TGGCCAGCAGATTAGTTTCAGGAAGAAGGAAGCCCTTGAAAGTCCTATGC
TGTTAGAGCCCTGCTCTCTCCTGTTCTCCTCCATACCAATGTTTCTCCCA
TTTTTTCCGAACTTTATCCCCGTGTAATGAACCCTCTCTGTCAAGTTAAA
CTAAAATCCCCCGTGGTACGGTCATGCTAATCACCTAAATTTATACATAT
TTGCTCCCTTTCTCTATTTTTCCCCCCTCCTTACAGTTCCTTCACTACTT
CCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_n11.b1 MSMg01no431_n11.b1 CHROMAT_FILE:
MSMg01no431_n11.b1 PHD_FILE: MSMg01no431_n11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:20 2005
         (250 letters)



>mm_chr2_68152305_68152954
          Length = 650

 Score =  427 bits (221), Expect = e-124
 Identities = 242/249 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaagacagccagtggtggccgagggtggttaccttctcttgggaggcagctgccttccc 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 acaagacagccagtggtggccgagggtggttaccttctcttgggaggcggctgccttccc 260

                                                                       
Query: 61  ctcctcgctcttctcatccatctcatcatcgctccactcccagtcgccgtcttcagtctt 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcctcgctcttctcatccatctcgtcatcgctccactcccagtcgccgtcttcagtctt 320

                                                                       
Query: 121 atgaaggtgaccgctcgacccaggaactcgccttacctgcaccaaaataagccacacttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgaaggtgaccgctcgacccaggaactcgccttacctgcaccaaaataagccacacttt 380

                                                                       
Query: 181 ctaggttgggatggacacagcactcactggtactgccactcaggttatccagcacacaca 240
           | ||| | ||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 caagggtcggatggacagagcactcactggtactgctactcaggttatccagcacacaca 440

                    
Query: 241 agcctctga 249
           |||||||||
Sbjct: 441 agcctctga 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no431_n11.g1 MSMg01no431_n11.g1 CHROMAT_FILE:
MSMg01no431_n11.g1 PHD_FILE: MSMg01no431_n11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:20 2005
         (436 letters)



>mm_chr2_68280652_68281487
          Length = 836

 Score =  812 bits (420), Expect = 0.0
 Identities = 432/436 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttgcaggtggtttgtcacagctgttttggaggaggtgattggccactttattagatgg 60
           ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 636 ttttgaaggtggtttgtcacagctgttttggaggaggtgattggctactttattagatgg 577

                                                                       
Query: 61  ctcgctccaccgcaaaaggaggcattttcttttggaccatcagacccagaaatttcttgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 ctcgctccaccgcaaaaggaggcattttcttttggaccatcagacccagaaatttcttgc 517

                                                                       
Query: 121 aggaattccaaggcaatactgagacagccaagcaaacactgcttttggtgagcaggcaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 aggaattccaaggcaatactgagacagccaagcaaacactgcttttggtgagcaggcaca 457

                                                                       
Query: 181 tgtgtgtttctgtcaaaataaattaagttagaaattcagaaaatattttgtgacttctgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tgtgtgtttctgtcaaaataaattaagttagaaattcagaaaatattttgtgacttctgt 397

                                                                       
Query: 241 tctaagtatttaacaagtagaataaacatccggacacaaacaacatcaagtctaaggaaa 300
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 396 tctaagtatttaacaagtagaataaacttccggacacaaacaacatcaagtctaaggaaa 337

                                                                       
Query: 301 acaaaaataaaaagccaagccagccctgagacggctgacagatcctcttgctgttggtcc 360
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 336 acaaaaataaaaagccaagccagccctgagacagctgacagatcctcttgctgttggtcc 277

                                                                       
Query: 361 aggttgtgccacctctgggtggctgagtccttgctacagtcctctcagggatccctcttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aggttgtgccacctctgggtggctgagtccttgctacagtcctctcagggatccctcttt 217

                           
Query: 421 ctccatttccttcctg 436
           ||||||||||||||||
Sbjct: 216 ctccatttccttcctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space:   353129
Effective search space used:   353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)