BAC Information

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BAC

Clone NameMSMg01-432N11
Chromosome2 (Build37)
Map Location 32,309,576 - 32,309,825
singlet/doubletsinglet
Overlap gene4933440H19Rik
Upstream geneBC034076, Ass1, Fubp3, LOC100041465, Prdm12, Exosc2, Abl1, BC094274, Fibcd1, Lamc3, 2810003C17Rik, Nup214, A130092J06Rik, LOC100040058, Ppapdc3, 5830434P21Rik, Pomt1, Uck1, LOC622534, 2900010J23Rik, Golga2, Dnm1, Ciz1, 1110008P14Rik, Lcn2, Ptges2, LOC100041671, Slc25a25
Downstream geneC230093N12Rik, Dpm2, Pip5kl1, St6galnac4, St6galnac6, Ak1, Eng, Fpgs, Cdk9, Sh2d3c, Tor2a, Ttc16, Ptrh1, 1700019L03Rik, Stxbp1, 9130404D14Rik, Lrsam1, Snora65, Slc2a8, Garnl3, Ralgps1, Angptl2, Zbtb34, Zbtb43
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432N11.T7 (MSMg01no432_n11.b1)MSMg01-432N11.TJ (MSMg01no432_n11.g1)
ACCAG524764AG524765
length820820
length of high quality
(start - end)
89 (67 - 155)252 (69 - 320)
definitionCHROMAT_FILE: MSMg01no432_n11.b1 PHD_FILE: MSMg01no432_n11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:43 2005CHROMAT_FILE: MSMg01no432_n11.g1 PHD_FILE: MSMg01no432_n11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTGCGATCGCAAACGACNCAAAAACTCATGACCGGCGCGGNAATCTGGAC
TGTTACAACCATACCAAAGGACTGTGCTGCCCTCCTAGACTCAGGCTATC
ACAAGCATCTCACACTCTGCCATGAAGCCTGTGGAAAGGTTTGGGGGGGG
TGCCAANACAGAGGAGGTGCTCATAAAACACGAACAGCCAGTTCAATGTT
GCCCCATGTCCACAAACCCAGCACCCCGCTTAGCTCTATGCCCTTTTTTT
TTTAACNCCCATCCCCGAAGGACCCTCCCACTACATTTCCGGAACGAAAC
GAGAAAAAAAACATTTCCTGTTTTTCGCGAACAACCGAAACCCACCCATA
CCTTTTTTCTCCCCCCCCTGAACTTCGGAAAAGGAGATCCTCGGGATTGG
GAGTTTTCCCCCCCCCCCCCTTTGTTATTCGCTTCCGTGTGTCGTTCGCC
GCCTCCCCACCCATACAATCCCACGGCAATACCTGAACCTACCTCTCGCT
TTAACGTCTTCATATAAGCACAACAAACGTCTATAAGTTAACCCTAATAC
TTCATACCATATTACCCATCTTCCCTTCCTATTTCCTTCCACTTTCTACA
CTTCCCCTCCCTTTACTCTTCCTTCATATTCATCCTCTATTAGCATTTGC
CCTCTCCTCACACCCCATCCCTATCATCCCTCATTTCTTCTTTACCCCCA
CTAAGCCCCCCGACACCCTCCAAACCTATCCCCCCACCCTCCCATCTCTT
ACACCCCCCTCTTCACAATTATATTCCCCTCACCCTTCCTCCTCCTCTCC
TTCTCTACTACACTCCTCCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTGCTTAGTCATGACGGGCTTTGAACTGGATCA
ACCAGACTCTCCAGGGGTATGTGGGTGCATGCTCTCCTCTGCATATTTCT
TTAGTCCATATGAGGTCAGAAATGGGTGAAAATCACTGGTCTAAGTCAGG
TACTGTTCTTGAACAGCATCTGCAAGGATGCTCAGGGATCTTATGGACCA
ATGTGTTTAAGGAGACAGGGAGACACTTTTCTGGACACGTGAGCTGCTAT
GGCCCTCATCCTTCTTTGTTTTTTCATACAGACAGGCTCAAAGCAGTCCA
GCGGTTCTGTTGTCTTCTCTGATACCGAAGAGTATAGCGCCCACCCCTTC
TGTTGCGTCCCCCCCCCCTTTGATTTTCTTTTCTCCTGCTTGTTTTTCTT
TTTCTTTCTCTCTGTTTTCTGCTCTTCCCTTATCTCCACTCCTACTTTTT
CCTTCTATTTTCTTTTTGTTTTTCCCCTTTTCTTCTTTTTCTTTTTTTCC
TCTTCATCTTTTCTCTTCCTCTTTCATGCTTCTCTTTCCCTCCTTCTCTT
ATTCCATCTTCCCTTTTCATTATCCCTCCCTTCTTCTTTCCTCCCCCCTT
CCTTTCCATACCTTCATTTTTCTTTCCTATCTTTTTTTCTCGTCCTTTTT
CTCTCTTTTTCTTTCGCTCATTTTATCGTTCTTTTTTTCCTTTTTTCTCC
CTTTTTACTCCTCTCCCACTCTTTTCGCTTACTTCCTTCCCGTTCTCTAC
TTTGTCCTTACCCCTGCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_n11.g1 MSMg01no432_n11.g1 CHROMAT_FILE:
MSMg01no432_n11.g1 PHD_FILE: MSMg01no432_n11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:43 2005
         (252 letters)



>mm_chr2_32309376_32310027
          Length = 652

 Score =  476 bits (246), Expect = e-139
 Identities = 249/250 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcttagtcatgacgggctttgaactggatcaaccagactctccaggggtatgtgggtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcttagtcatgacgggctttgaactggatcaaccagactctccaggggtatgtgggtgc 260

                                                                       
Query: 61  atgctctcctctgcatatttctttagtccatatgaggtcagaaatgggtgaaaatcactg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 atgctctcctctgcatatttctttagtccatatgaggtcagaaatgggtgaaaagcactg 320

                                                                       
Query: 121 gtctaagtcaggtactgttcttgaacagcatctgcaaggatgctcagggatcttatggac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtctaagtcaggtactgttcttgaacagcatctgcaaggatgctcagggatcttatggac 380

                                                                       
Query: 181 caatgtgtttaaggagacagggagacacttttctggacacgtgagctgctatggccctca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caatgtgtttaaggagacagggagacacttttctggacacgtgagctgctatggccctca 440

                     
Query: 241 tccttctttg 250
           ||||||||||
Sbjct: 441 tccttctttg 450


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 652
Length adjustment: 9
Effective length of query: 243
Effective length of database: 643
Effective search space:   156249
Effective search space used:   156249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)