BAC Information

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BAC

Clone NameMSMg01-433H10
Chromosome2 (Build37)
Map Location 85,915,627 - 85,915,870
singlet/doubletsinglet
Overlap geneOlfr1036
Upstream geneTnks1bp1, Agtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1
Downstream geneOlfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433H10.T7 (MSMg01no433_h10.b1)MSMg01-433H10.TJ (MSMg01no433_h10.g1)
ACCAG525240AG525241
length766743
length of high quality
(start - end)
244 (61 - 304)345 (69 - 413)
definitionCHROMAT_FILE: MSMg01no433_h10.b1 PHD_FILE: MSMg01no433_h10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:33 2005CHROMAT_FILE: MSMg01no433_h10.g1 PHD_FILE: MSMg01no433_h10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:34 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAT
GTTTCCTCAACACATTTGGATAAACACGCTTCTAAAATATGTTTTGATTT
CATTTCCTTAAGTTTGCCTTGGCAACTATCTTGTAGACTGCTTCTTTCAC
ATCTTTGTTCCTGAGACTGTAGATCATGGGGTTCAGCATAGGAATCACAC
TGGTATAAAAGACAGCCACCATCTTTCCCTGCTCCACAGACTCCTCCGTT
GGTCTTCTCAGATACATGAATATGAGGGTTCCATAAAACATGGATACAGC
TGTTTTTTGTCATCCACAGGCAGAGAATGCCTTTCTCCTGCCATCAGCTG
AGTGCATGCGTAACACAGCTACTACAATGAGCACATATGAAATGAGAACC
ACTGACCAGGAATACGTCAAGTTAATGCCCTTAATGACAATCATTGTGTA
CTCTTTGATATGCACCCCTCCACACGGCATCTTGATGATATCACGCTTTT
TTTTCTCCATCTGCCTTACTCCATATTATTCCTCTCTCTCTTTTCCTTTA
TCTTCCCCTCCCTTCCCTCTCTCCACTTTCTCATCATTCTCCATCCTATC
TTTTTTTTCTCTCCCTTCTTTACCATCTTCTTCCTCCCTCCCTTTTCTTG
CTTTTTCTCTCATCCCGCCCCCTCCCCCCCAACCATCTTCTTTCCTTTCT
TTCTATCTCGCCCTTCCTCATTCTAGCTTTTTTTTTCCCCCCTCTCTCCT
CTCTTCCTCCTCTTTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTTATCTTTCCAAAACTTTTAACATGAAGGGG
CATGGTATTTTGTCAAATGCTTTTTCAGCATCTGATGAGATGACCATGTG
ATTTTTTTCTTTGAGTTTGTTAATAAAAGGATTATATTAATGGACTTTTG
TATATTGAACCAATCTTGCATCTTCACTAACCCTGCACCCAATAGAGGGC
TAATATCTAAAATATATAAAGAAGCTATACTCCAAAAAACCAAAAAACCT
AATCAAAAAATGGAGTAGAAAGCTAAACAGAGAATTCACAACAGAGGAAT
CTCAAATGGGCTAGATGCACTTAAAGAAATGTTCAAAGTCCTTAGTGATC
AGGAATATGCAAATCAAAATGATCCTGAAATTCCATCTTACACCAATCAG
AAACTCATGTGACAGTAAATGCTGGATAGTCTGCGTACAAAGAGGAACAT
TTCTCCATTGTTTGGTGGATTTCATACTGCTATTTTTCCACTCCTTCCCC
ATATCACTTTTCTTTCCCTTTTCACTTTTCTCTTCACTCTTCTCAATTCA
TCCCTTCCTCTTCCCCCCAAATTGGACTGTTTCTTTTCCTACAACTTCCT
TTTTCCCTTCTTTTTCCTATTCTTCCCTCCATTCCCTCTTCCATATCCTC
CCTTTCTTCTTCCTTTTCTATTCCCTTATTCTTTTCCCCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_h10.b1 MSMg01no433_h10.b1 CHROMAT_FILE:
MSMg01no433_h10.b1 PHD_FILE: MSMg01no433_h10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:33 2005
         (244 letters)



>mm_chr2_85915427_85916070
          Length = 644

 Score =  441 bits (228), Expect = e-128
 Identities = 240/244 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacatttggataaacacgcttctaaaatatgttttgatttcatttccttaagtttgcctt 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cacatttggttaaacacgcttctaaaatatgttttgatttcatttccttaagtttgcctt 385

                                                                       
Query: 61  ggcaactatcttgtagactgcttctttcacatctttgttcctgagactgtagatcatggg 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggcaactatcttgcagactgcttctttcacatctttgttcctgagactgtagatcatggg 325

                                                                       
Query: 121 gttcagcataggaatcacactggtataaaagacagccaccatctttccctgctccacaga 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 324 gttcagcataggaatcacactggtataaaagacagcaaccatctttccctgctccacaga 265

                                                                       
Query: 181 ctcctccgttggtcttctcagatacatgaatatgagggttccataaaacatggatacagc 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctcctccgttggccttctcagatacatgaatatgagggttccataaaacatggatacagc 205

               
Query: 241 tgtt 244
           ||||
Sbjct: 204 tgtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)