BAC Information

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BAC

Clone NameMSMg01-433J14
Chromosome2 (Build37)
Map Location 143,912,652 - 143,912,846
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik
Downstream geneLOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1, 1700010M22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433J14.T7 (MSMg01no433_j14.b1)MSMg01-433J14.TJ (MSMg01no433_j14.g1)
ACCAG525344AG525345
length793764
length of high quality
(start - end)
230 (65 - 294)195 (69 - 263)
definitionCHROMAT_FILE: MSMg01no433_j14.b1 PHD_FILE: MSMg01no433_j14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:44 2005CHROMAT_FILE: MSMg01no433_j14.g1 PHD_FILE: MSMg01no433_j14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCGCGCCCGTTATACGACTCACTATTCCCAGAGGATCCGCGGAATTCTT
TGTATGCCGCAGTTCAAACTGAAAACTCAGGCCACCAAGATGGCTCAATG
GGTAAAGGCGCCCTGCTGGCAAGCCCGCCGACCCAAGCACAGTGCCTGGG
ACTCACACGGTAGGAGAGCAAACTCCCGAGGTTGTGCTCCAATCTCGACT
TGCAAACTGTGGTGTGAGAACCTACACATATGTACATGTACACACACACA
CACACACACACTCTCACATACTCCAAATAAACACATAAACAAACAAACAA
GGGGCTGGTTAGATGTCTCAGTGGGCAAGAGCACCCGACTGCTCTTCTGA
AGGTCCAGAGTTCAAATCCTAGCAACCACATGGTGGCTCACAATCATCCG
CTAACGAGTACCGATTCCTTCTTCTGAATTGTCTGCATACACCTCCAGTG
TACCTACCTTCCACCTATAGCTCCTCCCCAACTTCCCTATACTCCCTCCT
CCCCCCTTTTTTTTCTCCCACCGTCCTTTCACCTCTGTTTTCTACTCTTT
TTTCCCTCTTTCATCTTCCCCCTACCTCACTCATCTCTACCCCTTTCTCC
TCTTTACTCCTTTCTTTCTATTATTCTCATTACCCTTCTATTCCCTTCTT
TCTCTCTTCCTTCCCCTTTCCCTGCTTTTTTCTCTCTATCCCCGCCCCTA
CCCATCCCCCATTATCTTTGCCTCTCCTTCTCTCTCTCCCCTACCTCACA
CATTCTCTTTTTTTCTCCCCTTCTCCTTTCTTCCTCTCTTTTN
TGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTTAGGGGGAAATGGCTGTTAGAGCCCAAAT
GTGTTCTCTAAATCTTCTCTGAAGATGTGTATGTGGTGGCTAAGCTATGC
AATATGGTCTTTATAAACAAAACGAGACCAAAAAAAAAAAATTCTAATGT
TCACACAGAATGAACAGGACTCCTCCGCAGTTCGATGAGTTTCCAGAAGC
AAACACTCCCCGGTTAGCGGTCTAGGTGCGACACATCCAGGCAAGTTCTG
TTTACATTAACTTACTACCCCTGGCCACCCACGTCCTCATAGACCCCTCT
CAGATTCTGTTTCTCATATTATGTTGATACGCACCTCCCGACACTGTTCT
CGACTGCTCTTGAACCTTTTCTTCTTTCCTTTTCCCCCTGTCGCCTTTCC
TCCTCGCTTATTTCTGTTTCCCATTTTCCCCTTTCCTCCCTCCCCCTTTC
CCCTTTCCTCCTTTCCCTTTCCTCTTTCCCTTTTTCCCTTTCCTTCCCCT
CTCTCTTTCTCCCTTCCTTTCTCCCCTTTCCCTCCTTCTCTTCCTTTTTT
CTCTCCCCTCTCTCTCTCCCCTTTCCTCCATCTCTTCTTATTTACCTTCA
TCTTTCCATTTCCTCCTTCCATCTTCCTTCCTCTCCCCCTCCTTTCCCCT
CTTTCCCTTTACCTCCCTTTCCCTTCTTTCCTCTGCTCTTCCCCTTTTTC
CCTTTTCCCCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_j14.g1 MSMg01no433_j14.g1 CHROMAT_FILE:
MSMg01no433_j14.g1 PHD_FILE: MSMg01no433_j14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:44 2005
         (195 letters)



>mm_chr2_143912452_143913046
          Length = 595

 Score =  331 bits (171), Expect = 2e-95
 Identities = 189/195 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttagggggaaatggctgttagagcccaaatgtgttctctaaatcttctctgaagatgt 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttggggggaaatggctgttagagcccaaatgtgttctctaaatcttctctgaagatgt 260

                                                                       
Query: 61  gtatgtggtggctaagctatgcaatatggtctttataaacaaaacgagaccaaaaaaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtatgtggtggctaagctatgcaatatggtctttataaacaaaacgagaccaaaaaaaaa 320

                                                                       
Query: 121 aaattctaatgttcacacagaatgaacaggactcctccgcagttcgatgagtttccagaa 180
           |||||||||||||||||||||| | |||||||||||| | ||||||||||||||||||||
Sbjct: 321 aaattctaatgttcacacagaaagcacaggactcctcagtagttcgatgagtttccagaa 380

                          
Query: 181 gcaaacactccccgg 195
           |||| ||||||||||
Sbjct: 381 gcaatcactccccgg 395


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 595
Length adjustment: 8
Effective length of query: 187
Effective length of database: 587
Effective search space:   109769
Effective search space used:   109769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)