BAC Information

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BAC

Clone NameMSMg01-433K07
Chromosome2 (Build37)
Map Location 72,975,334 - 73,138,345
singlet/doubletdoublet
Overlap geneGtpbp9, Sp9, 1700023B02Rik
Upstream geneRapgef4, B230120H23Rik, Cdca7, LOC383712, LOC635960, LOC100039928, 6430710C18Rik, Sp3, Hspe1-ps5, LOC620110
Downstream geneScrn3, Gpr155, Wipf1, Chrna1, Chn1, Atf2, Atp5g3, LOC667729, LOC100040172
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433K07.T7 (MSMg01no433_k07.b1)MSMg01-433K07.TJ (MSMg01no433_k07.g1)
ACCAG525378AG525379
length734762
length of high quality
(start - end)		462 (64 - 525)387 (69 - 455)
definitionCHROMAT_FILE: MSMg01no433_k07.b1 PHD_FILE: MSMg01no433_k07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:47 2005CHROMAT_FILE: MSMg01no433_k07.g1 PHD_FILE: MSMg01no433_k07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,137,884 - 73,138,345)(72,975,334 - 72,975,720)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
TTCTTGCCTCAGACTTTATAGAAATATGGTATTAGGGAAATTTCCATTTG
CACTTTTTCCTTCCAAATTGACAAGATGAAAGTACAAGAATAAATACATA
GAGACTTTGATTCTGTGTGTCATGTAGACTAAGATTGTCTGAAGGCACTA
ACTGATTAAATGAAGATAAGAATAGAGTAGGATGTTTCCCCTCTTTGCTC
CGATTACATGAACTAACGCAAGTTCCCAGTGGCATTGACTGGGCATGCCT
AGGTTATGCCTGNTCCTGAGAAGCTGAGGCAGAAAGATCGAGCTGCATAG
TGAGACTCTGAAGGAGAGTCCTGATCTGTGCCTGACGCACTGTCAAGGTT
GAGAACCATTTGCTTAAACCACATATAAGAACGATTGAGATTCAACATGA
TCATATTTATTTCTATTTTCTTAATTTGCAGAATTTATAAAAATCATCAA
TTTTTATCCTAAGGAAATAATCATGAATTATTCTTAAAATTTCTGTATTG
CGCAGAGCAAAAATGCCTAAACATTGCCATAATTAGGTATTAAGCGAACT
TCTCGTGGCGCACTACTACCCATGGTCCAAATTCTCGTGCTTTTTTTTCA
ATGGGACCGGAATACACCTCGTTTTTGTCCCTCCCTCTTCTTGTTTCCCC
CCTCTTCGCTCGGCCACGGCGTTTCATTTTTCTT

ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTATAAAATACCTGCTGTCTTTAAATAGGGCTT
AAACTGTTTATTCTCTTGAAGCTAGAAAAAATTATTTAGTGCTTGTTGTT
TATAGAGAAAAACAATCCTATACATTTGATGAATTATATCACTCAGGAAT
CACTCTCAGGAGATGATGCTCACGGAAATGACAACGGATGCTCCTAACAT
AGTATTTTTTAATTTACTCTACAAAGAGAGATAATGAGCCATAAATCACA
TTGAACAAAACACGCAACCAGGCTTTCACATATGCATTTATTGTGGGGCA
ATAGTCTTTTCCTTACAAAGAAAGATACACTTCTATGATCATCGTCCTCA
TGATGTGCACTAGTATACTATCGCCACTTGATAAGAACTTGAAATTGCTG
AAAGAGTAACCTAAAACCAATTAATGAAAACCAAACGGAAGTCTGGCTCA
CTCCTACATAATCCCTGGGCCTTGATGAGGCAAGAGGATTGCTTTCTGTT
CTAGGTCAATCTTGGTTTTCACCAAAAACAACCCCCCCTAATCATAATAA
ACCCCCTAATTTCTCCATATTATATTTATCCTTATACCCCCTCTTTCCTT
TGTGTTAATTTTCTATTCAAAAAACCTGCTCGGACCGGGTTCTCCTCGTG
TTTCAAGTATATTCTCCCTCCTTTTTATCCTTTATCCCTTCCTTTTTTCT
CTTTTCATATCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_k07.b1 MSMg01no433_k07.b1 CHROMAT_FILE:
MSMg01no433_k07.b1 PHD_FILE: MSMg01no433_k07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:47 2005
         (462 letters)



>mm_chr2_73137684_73138545
          Length = 862

 Score =  864 bits (447), Expect = 0.0
 Identities = 458/462 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttatagaaatatggtattagggaaatttccatttgcactttttccttccaaattgaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 ctttatagaaatatggtattagggaaatttccatttgcactttttccttccaaattgaca 603

                                                                       
Query: 61  agatgaaagtacaagaataaatacatagagactttgattctgtgtgtcatgtagactaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 agatgaaagtacaagaataaatacatagagactttgattctgtgtgtcatgtagactaag 543

                                                                       
Query: 121 attgtctgaaggcactaactgattaaatgaagataagaatagagtaggatgtttcccctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 attgtctgaaggcactaactgattaaatgaagataagaatagagtaggatgtttcccctc 483

                                                                       
Query: 181 tttgctccgattacatgaactaacgcaagttcccagtggcattgactgggcatgcctagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tttgctccgattacatgaactaacgcaagttcccagtggcattgactgggcatgcctagg 423

                                                                       
Query: 241 ttatgcctgntcctgagaagctgaggcagaaagatcgagctgcatagtgagactctgaag 300
           ||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ttatgccagttcctgaggagctgaggcagaaagatcgagctgcatagtgagactctgaag 363

                                                                       
Query: 301 gagagtcctgatctgtgcctgacgcactgtcaaggttgagaaccatttgcttaaaccaca 360
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 362 gagagtcctgatctgtgcctgacgcattgtcaaggttgagaaccatttgcttaaaccaca 303

                                                                       
Query: 361 tataagaacgattgagattcaacatgatcatatttatttctattttcttaatttgcagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tataagaacgattgagattcaacatgatcatatttatttctattttcttaatttgcagaa 243

                                                     
Query: 421 tttataaaaatcatcaatttttatcctaaggaaataatcatg 462
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tttataaaaatcatcaatttttatcctaaggaaataatcatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space:   385104
Effective search space used:   385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no433_k07.g1 MSMg01no433_k07.g1 CHROMAT_FILE:
MSMg01no433_k07.g1 PHD_FILE: MSMg01no433_k07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:47 2005
         (387 letters)



>mm_chr2_72975134_72975920
          Length = 787

 Score =  741 bits (383), Expect = 0.0
 Identities = 386/387 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tataaaatacctgctgtctttaaatagggcttaaactgtttattctcttgaagctagaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tataaaatacctgctgtctttaaatagggcttaaactgtttattctcttgaagctagaaa 260

                                                                       
Query: 61  aaattatttagtgcttgttgtttatagagaaaaacaatcctatacatttgatgaattata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaattatttagtgcttgttgtttatagagaaaaacaatcctatacatttgatgaattata 320

                                                                       
Query: 121 tcactcaggaatcactctcaggagatgatgctcacggaaatgacaacggatgctcctaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcactcaggaatcactctcaggagatgatgctcacggaaatgacaacggatgctcctaac 380

                                                                       
Query: 181 atagtattttttaatttactctacaaagagagataatgagccataaatcacattgaacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atagtattttttaatttactctacaaagagagataatgagccataaatcacattgaacaa 440

                                                                       
Query: 241 aacacgcaaccaggctttcacatatgcatttattgtggggcaatagtcttttccttacaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacacgcaaccaggctttcacatatgcatttattgtggggcaatagtcttttccttacaa 500

                                                                       
Query: 301 agaaagatacacttctatgatcatcgtcctcatgatgtgcactagtatactatcgccact 360
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 501 agaaagatacacttctatgatcatcgtcctcatgatgtgcactagtataccatcgccact 560

                                      
Query: 361 tgataagaacttgaaattgctgaaaga 387
           |||||||||||||||||||||||||||
Sbjct: 561 tgataagaacttgaaattgctgaaaga 587


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 787
Length adjustment: 9
Effective length of query: 378
Effective length of database: 778
Effective search space:   294084
Effective search space used:   294084
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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