XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAT
AAATATTTCAGTGGCTGAATGAATAAAAGAAGCATCATAGCAAACAAGCA
AATGCCTATCAAATCTAGAATAGTTACACTGTTACACTGAACATTCTGCT
TACAAGGCTAAGGTTAAGCTTTTTGAACTTGTCTATCTTATCTAGAGGTA
TCAATTCCAATGTTTTTCTTGGAGACAACACACAAGTTGAATGATATAAA
AATCAAATATTCATTTAGAATTACATGGGTATTTTTATTTATTCATGGCT
GGCTGCTGATAGCCCAAAAGTCAAGATAAATTCCTATCAGTGCTATATTA
TAAACAGTGCTATAATTCATGTTCATTTGGAAATGCTGTTTTCTAGTTAT
TATGGGGTACAATATACATAGCCAGATCGTATACTTTGGTGATTAGTTTC
CCTGGGGTTCCTGCTGTTGCCGCTGGCGCCGCTCCCCTTCTCCCTCCTTC
TCCCTTCTTCCCCCTTTTTTTTCCCCCCCCCTCTCTCTCCCTCTTCTTCT
TTCCTCTCTTTTCCTACTTTCTCCCCTCCCCTCCATCTTACCCTTTCTTC
TTTTTTCTCCTTCTATCATTTTTCTCCCCTCCTCCTTTCCCTTCTTTCTT
CTTCCTCCCTTTTCTTTTTTTTCTCTTTCCCCCCCCCTCCCACGACCTTT
TCTTCCTTTTTTCCCCGGCCCCTCCTCTTCTTCTTTTTTTCTCCTCTCCC
TTCACTCCCACT

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTTCGAAAGAAAAAGTCTTAAAAACTCATTAA
ATTTCTAACACATCCATACTTGTTGCTATATTCAAATTTCTCCCTACGTT
TTCTTTAACATGATTTTCTCTTGTTTAAGTGACCTTTGTCCCAAATCTCG
GAGATGGTGTATAATGAGCAGGAGACCTGTTGTCTGTGGAAACTGTGGAG
ACATAGCATCAGAGATTTTAATGAGAAAATAGCAAGAGAAAAAAAATAAT
AGGAGAGTTCAATATTCATTTAGACTGAATTAAGGATAAATATTTACTTT
AGGAGCATAGCAGGATCAAGTCTGTGGCTCCCTGGTACAGACGCTGCCCT
TTAAACACGCCTCTGTCAAGTCACAGGGAAATGCGCACAGNAACTCTTTG
TATTCTTCTACCTCTCCTGGGCCCAAATGGAAAACTGAGAAAGCTTGCCT
CTCCCATTAATGTACAGAACCCCTCCTCCTTAAAAAAGAAAGGGGCCAGG
ATTCCTGGGGAGCCCCTGTGGGGAATTTGCCTGTGCCCCTGCCCGGTTGC
TTAAAAATTGGGGTTCTCGGGACACATGTTGGCCTGTTGGCTACTATAAA
CTTCCTTGTTCCCTCTTTTCCCTCTCTGCCCTCCGTTCCCTCTCCATTTC
CTCCTTTTCCTCTCCGTTCCTCTCCCTTTTCCTTTCCGGTAT

Query= MSMg01no433_l22.b1 MSMg01no433_l22.b1 CHROMAT_FILE:
MSMg01no433_l22.b1 PHD_FILE: MSMg01no433_l22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:55 2005
         (382 letters)



>mm_chr2_106564173_106564954
          Length = 782

 Score =  733 bits (379), Expect = 0.0
 Identities = 379/379 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaataaatatttcagtggctgaatgaataaaagaagcatcatagcaaacaagca 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 ggaattcaataaatatttcagtggctgaatgaataaaagaagcatcatagcaaacaagca 523

                                                                       
Query: 64  aatgcctatcaaatctagaatagttacactgttacactgaacattctgcttacaaggcta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 aatgcctatcaaatctagaatagttacactgttacactgaacattctgcttacaaggcta 463

                                                                       
Query: 124 aggttaagctttttgaacttgtctatcttatctagaggtatcaattccaatgtttttctt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 aggttaagctttttgaacttgtctatcttatctagaggtatcaattccaatgtttttctt 403

                                                                       
Query: 184 ggagacaacacacaagttgaatgatataaaaatcaaatattcatttagaattacatgggt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 ggagacaacacacaagttgaatgatataaaaatcaaatattcatttagaattacatgggt 343

                                                                       
Query: 244 atttttatttattcatggctggctgctgatagcccaaaagtcaagataaattcctatcag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 atttttatttattcatggctggctgctgatagcccaaaagtcaagataaattcctatcag 283

                                                                       
Query: 304 tgctatattataaacagtgctataattcatgttcatttggaaatgctgttttctagttat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 tgctatattataaacagtgctataattcatgttcatttggaaatgctgttttctagttat 223

                              
Query: 364 tatggggtacaatatacat 382
           |||||||||||||||||||
Sbjct: 222 tatggggtacaatatacat 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 782
Length adjustment: 9
Effective length of query: 373
Effective length of database: 773
Effective search space:   288329
Effective search space used:   288329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no433_l22.g1 MSMg01no433_l22.g1 CHROMAT_FILE:
MSMg01no433_l22.g1 PHD_FILE: MSMg01no433_l22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:55 2005
         (367 letters)



>mm_chr2_106398973_106399740
          Length = 768

 Score =  688 bits (356), Expect = 0.0
 Identities = 362/364 (99%), Gaps = 1/364 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttcgaaagaaaaagtcttaaaaactcattaaatttctaacacatccatacttgttgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttcgaaagaaaaagtcttaaaaactcattaaatttctaacacatccatacttgttgct 260

                                                                       
Query: 61  atattcaaatttctccctacgttttctttaacatgattttctcttgtttaagtgaccttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atattcaaatttctccctacgttttctttaacatgattttctcttgtttaagtgaccttt 320

                                                                       
Query: 121 gtcccaaatctcggagatggtgtataatgagcaggagacctgttgtctgtggaaactgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcccaaatctcggagatggtgtataatgagcaggagacctgttgtctgtggaaactgtg 380

                                                                       
Query: 181 gagacatagcatcagagattttaatgagaaaatagcaagagaaaaaaaa-taataggaga 239
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 gagacatagcatcagagattttaatgagaaaatagcaagagaaaaaaaaataataggaga 440

                                                                       
Query: 240 gttcaatattcatttagactgaattaaggataaatatttactttaggagcatagcaggat 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttcaatattcatttagactgaattaaggataaatatttactttaggagcatagcaggat 500

                                                                       
Query: 300 caagtctgtggctccctggtacagacgctgccctttaaacacgcctctgtcaagtcacag 359
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 501 caagtctgtggctccctggtacagacgctgtcctttaaacacgcctctgtcaagtcacag 560

               
Query: 360 ggaa 363
           ||||
Sbjct: 561 ggaa 564


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 768
Length adjustment: 9
Effective length of query: 358
Effective length of database: 759
Effective search space:   271722
Effective search space used:   271722
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)