BAC Information

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BAC

Clone NameMSMg01-433M03
Chromosome2 (Build37)
Map Location 132,969,218 - 132,969,733
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc23a2, LOC100043470, EG329521, 5730494N06Rik, Pcna, Cds2, Prokr2, 1700026D11Rik, Prei4, LOC100043781, LOC383801, LOC668906, Chgb, 3300001M20Rik, Mcm8, Crls1, B430119L13Rik, 5830467P10Rik, LOC668908
Downstream geneLOC100043785, A430048G15Rik, Bmp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433M03.T7 (MSMg01no433_m03.b1)MSMg01-433M03.TJ (MSMg01no433_m03.g1)
ACCAG525466AG525467
length770708
length of high quality
(start - end)
124 (74 - 197)520 (71 - 590)
definitionCHROMAT_FILE: MSMg01no433_m03.b1 PHD_FILE: MSMg01no433_m03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:56 2005CHROMAT_FILE: MSMg01no433_m03.g1 PHD_FILE: MSMg01no433_m03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCACCCTAGCGGTACGGCAATTGCATCATGGTATTTAAATTACATCTC
AATAAAGCTATCTCTAAACAACTTATTTAGTTAACTTTACTTCAAATATA
TATGTTTATAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGNNNNCT
CNCNNTNCTTTNTNCNNTCTTCCTGTCTTCTCCCTCTTTTTTTTTCCTCC
CTTCCCNTNTTTTTTTTTTTTTTTCTCTCCCCCCCCCCCCCCCCCNNTTT
TTTTTTTTTTCCNCCCCCNCCCCCCCNNNCCCCCCCCNCCCTTTTTTTCC
CCCCCCCCCCCCCCCTNTCTTGCCCCTCCCTTCTCCTTCCTTTTCCCTTT
CCCTCTTTACCACCAATCCCTTGTCTTCTTTTCATCCTTTGTTCCTCTGA
CCCTCCCCTTCCCTCCCTCTCCTACTCCTCTCTTGTCCTTCTCCTCCCCT
TCTTCCCCTTTCCTCCCCCTTCCCTTCTCCATACCCTTCCCCTTTTCCTC
CCCTCCCTCTTCCCCCTTTTCCTCCCTTCCCCTTCTTCTCCCCCTTTTTT
TCTCTTTCACTCTCTCCTCTTTTCCCCCCCCCTCCCCCTATTTCCCCCCA
TCGCCCCCCCCTACCTTCCCCCTCTCTTCCCTTTTTCCTCTCTCCCTTCC
TGTCCCCCCCCCCCCTTTCCCTTTCCCGCCTCCTCTACCGTCCCCCCGTC
CCTCCTTTCCATTTTTTCTT
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTGGAACAGGAGGTATAGGTGGTTGTGATC
CATGGGACGTAGGTACTGGGAACTGAACTTTTTTCTTCTGTAAGAGCAGT
AGATGCTCTCAAACACTGAGCCATCTCTCTCACTCCTATATTTTGAGTCT
TAGAGCCTGGAAATTACAGCCTCCAGGAATTAGTCATTGAGATTCCCAAC
AAGAAATAAGATCTGAGTGAATAGAGGCTGGGGTGGTTACAGCAGCAAAC
ACTATACTCTATTATAGGCTCCTAAGAATTCTTTGTATAAATCTTCCACT
TTCCACATGTTCACTGTCTAGTCAAGACTGGTGTCCTTCCCTGTCAAAAG
ACTTCTGTTGATTCTTCTCTTCTGAATTCTGATATTCTCCTGCTGCCCAG
CACTGTCCTCGATCCTCCTCTTAGGATATAAATCAACCTGCTTTCTTTCC
ATCTCCCATAGTTTTGTGATGGCATTTCTTGTATCCTCTCTGCCTGTCCC
CCACCAGCCACCTCAATAGACACTAGATAAAGAAGTACCTGAGTGGTTTC
TTAAAATATACCTATCCATCTACCTATTCACTGACACGCGGTTTTTCTGC
ACCGCCCTGGCTGTCCCGTAACTCACTCCTTTCGACTTTCCAGCCTTGGC
CTCCATAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_m03.g1 MSMg01no433_m03.g1 CHROMAT_FILE:
MSMg01no433_m03.g1 PHD_FILE: MSMg01no433_m03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:56 2005
         (520 letters)



>mm_chr2_132969018_132969937
          Length = 920

 Score =  922 bits (477), Expect = 0.0
 Identities = 507/517 (98%), Gaps = 2/517 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctggaacaggaggtataggtggttgtgatccatgggacgtaggtactgggaactgaactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctggaacaggaggtataggtggttgtgatccatgggacgtaggtactgggaactgaactt 260

                                                                       
Query: 61  ttttcttctgtaagagcagtagatgctctcaaacactgagccatctctctcactcctata 120
           ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttcctctgtaagagcagtagatactctcaaacactgagccatctctctcactcctata 320

                                                                       
Query: 121 ttttgagtcttagagcctggaaattacagcctccaggaattagtcattgagattcccaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 ttttgagtcttagagcctggaaattacagcctccaggaattagtcattgagattcccaag 380

                                                                       
Query: 181 aagaaa-taagatctgagtgaatagaggctggggtggttacagcagcaaacactatactc 239
           | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 a-gaaaataagatctgagtgaatagaggctggggtggttacagcagcaaacactatactc 439

                                                                       
Query: 240 tattataggctcctaagaattctttgtataaatcttccactttccacatgttcactgtct 299
           ||  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 440 tacaataggctcctaagaattctttgtataaatcttccactttccacatgttcactatct 499

                                                                       
Query: 300 agtcaagactggtgtccttccctgtcaaaagacttctgttgattcttctcttctgaattc 359
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 agtcaagactggcgtccttccctgtcaaaagacttctgttgattcttctcttctgaattc 559

                                                                       
Query: 360 tgatattctcctgctgcccagcactgtcctcgatcctcctcttaggatataaatcaacct 419
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgacattctcctgctgcccagcactgtcctcgatcctcctcttaggatataaatcaacct 619

                                                                       
Query: 420 gctttctttccatctcccatagttttgtgatggcatttcttgtatcctctctgcctgtcc 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gctttctttccatctcccatagttttgtgatggcatttcttgtatcctctctgcctgtcc 679

                                                
Query: 480 cccaccagccacctcaatagacactagataaagaagt 516
           |||||||||||||||||||||||||||||||||||||
Sbjct: 680 cccaccagccacctcaatagacactagataaagaagt 716


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space:   464100
Effective search space used:   464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)