Query= MSMg01no434_b19.b1 MSMg01no434_b19.b1 CHROMAT_FILE:
MSMg01no434_b19.b1 PHD_FILE: MSMg01no434_b19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:25 2005
(520 letters)
>mm_chr2_96994893_96995812
Length = 920
Score = 839 bits (434), Expect = 0.0
Identities = 501/535 (93%), Gaps = 21/535 (3%)
Strand = Plus / Minus
Query: 4 ggaattcttgcctac-cacattaactgaggcattcagt-----------------tattg 45
||||||||||||||| || ||||||||||||||||||| |||||
Sbjct: 626 ggaattcttgcctacacagattaactgaggcattcagtctgataggacaaagaactattg 567
Query: 46 aattctttaccttttgactggtgccaggcatggctggaataggcagaacacagcctgtaa 105
|||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||
Sbjct: 566 aattctttaccttttggctggtgacaggcatggctggcataggcagaacacagcctgtaa 507
Query: 106 tgtactctagtaagtctcgaataagtctttttctatgactgaaaaatataactttcttga 165
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ggcactctagtaagtctcgaataagtctttttctatgactgaaaaatataactttcttga 447
Query: 166 ctctctaactgggtaagtactatatgttaaattgttcatagaacttttagcacaatgcca 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ctctctaactgggtaagtactatatgttaaattgttcatagaacttttagcacaatgcca 387
Query: 226 gtataaagcaatcattgtgaggtcaacagtttctctctgagaattctatataaacagact 285
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gtataaagcgatcattgtgaggtcaacagtttctctctgagaattctatataaacagact 327
Query: 286 tccaaccaggcagtggtggcacgtgcctttaatcccagcactaggaaggcagaggcaggt 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tccaaccaggcagtggtggcacgtgcctttaatcccagcactaggaaggcagaggcaggt 267
Query: 346 gaatttcttagtccaaggccagcctggtctacacagtaagttccaggacagccaggacta 405
|||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 266 gaatttcttagttcaaggctagcctggtctacagagtaagttccaggacagccaggacta 207
Query: 406 catagagaaaccctgtctctaaacaaaaaacaaaaacaaaaaacaaaacaaaacaaaaca 465
|| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 206 cacagagaaaccctgtctctaaacaaaaaacaaaa-caaaa--caaaacaaaacaaaaca 150
Query: 466 aaacaattccagacttctgtttgtcattctatgtgtggnaatgaagcaatttaga 520
|||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 149 aaacaattccagacttctgtttgtcattctatgtgtggtaataaagcaatttaga 95
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space: 464100
Effective search space used: 464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no434_b19.g1 MSMg01no434_b19.g1 CHROMAT_FILE:
MSMg01no434_b19.g1 PHD_FILE: MSMg01no434_b19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:25 2005
(456 letters)
>mm_chr2_96829577_96830433
Length = 857
Score = 806 bits (417), Expect = 0.0
Identities = 447/457 (97%), Gaps = 3/457 (0%)
Strand = Plus / Plus
Query: 1 ctccctgcaaattcaaaatgatcattgagcacaatgctttaatggaattgatgtcaggat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctccctgcaaattcaaaatgatcattgagcacaatgctttaatggaattgatgtcaggat 260
Query: 61 gggaaataaatttcctgaatcagttcacaactttttaagaataaataagcattcatactt 120
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtaaataaatttcctgaatcagttgacaactttttaagaataaataagcattcatactt 320
Query: 121 tcctaagaatcatagtttttaatcacgttcaccaaaggactcataaaataccaaaaatag 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 tcctaagaatcatagtttttaatcacgttcaccaagggactcataaaataccaaaaatag 380
Query: 181 tagaagtaaaacttcacaaacattaaagaataagggaacacatgaatataaaatcccaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagaagtaaaacttcacaaacattaaagaataagggaacacatgaatataaaatcccaag 440
Query: 241 gcaagtctttggggggaaaaatgtaagaatgataaactgtactaagaaaggaactaaagc 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcaagtctttggggggaaaa-tgtaagaatgataaactgtactaagaaaggaactaaagc 499
Query: 301 acaaatatataaaataaacaaaaaaacaaggcaattaatataaaa-ggcaaggcaattaa 359
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 500 acaaatatataaaataaacaaaaaaacaaggcaattaatataaaaaggcaaggcaattaa 559
Query: 360 aa-ctaactcctaagagattgctttattagcatatacattaataaatgtatgctaatcct 418
|| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 560 aaactaactcctaagagattgctttattaacatatacattaataaatatatgctaatcct 619
Query: 419 atactgatcatgtgtaacaaaaaatcatataattata 455
|||||||||||||||| ||| ||||||||||||||||
Sbjct: 620 atactgatcatgtgtaccaataaatcatataattata 656
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 857
Length adjustment: 10
Effective length of query: 446
Effective length of database: 847
Effective search space: 377762
Effective search space used: 377762
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
