Query= MSMg01no434_d24.b1 MSMg01no434_d24.b1 CHROMAT_FILE:
MSMg01no434_d24.b1 PHD_FILE: MSMg01no434_d24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:36 2005
(369 letters)
>mm_chr2_117055207_117055975
Length = 769
Score = 629 bits (325), Expect = 0.0
Identities = 352/363 (96%), Gaps = 4/363 (1%)
Strand = Plus / Minus
Query: 7 attcagctccgtgtccgtccacatcgattctaagtttagtgttgtgtaatgttatttgac 66
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 attcagctccgtggccgtccacatcgattctaagtttagtgttgtgtaatgttatttgac 710
Query: 67 tccctcgtgatggtaatgtagagatgtcagatataaggtaacatttcagtttcaagctga 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 tccctcgtgatggtaatgtagagatgtcagatataaggtaacatttcagtttcaagctga 650
Query: 127 atgtgtgagggagcaaaatgccagcaagcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 atgtgtgagggagcaaaatgccagcaagcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 590
Query: 187 gcgcgcgtgtgtgtgtgtgtgtgttcatgtgagggttataccaaggctaaacatcaaact 246
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 ----gtgtgtgtgtgtgtgtgtgttcatgtgagggttataccaaggctaaacatcaaact 534
Query: 247 tcaaagtagtgggagaaaatcctactccaatagttttctttctttttgtccttaaatatt 306
|||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 533 tcaaagtaatgggagaaaatcctacaccaatagttttctgcctttttgtccttaaatatt 474
Query: 307 tcacacttaatccattttaatccatttcactactaagtttcagtttgaatgggatattgc 366
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 473 tcacacttaatccattttaatccatttcactactaagtttccgtttgaatgggatattgc 414
Query: 367 tca 369
|||
Sbjct: 413 tca 411
Score = 62.6 bits (32), Expect = 4e-14
Identities = 40/46 (86%), Gaps = 6/46 (13%)
Strand = Plus / Plus
Query: 157 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcgtgtgtgtgt 202
||||||||||||||||||||||||||||||| |||||||||
Sbjct: 82 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg------tgtgtgtgt 121
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 84
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 5
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space: 273600
Effective search space used: 273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no434_d24.g1 MSMg01no434_d24.g1 CHROMAT_FILE:
MSMg01no434_d24.g1 PHD_FILE: MSMg01no434_d24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:36 2005
(467 letters)
>mm_chr2_116923067_116923933
Length = 867
Score = 888 bits (459), Expect = 0.0
Identities = 465/467 (99%)
Strand = Plus / Plus
Query: 1 caggctcagagaaacaccctgtttctaaatacaagggtgtgtgtggcggggggaggggca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggctcagagaaacaccctgtttctaaatacaagggtgtgtgtggcggggggaggggca 260
Query: 61 gagacttgaggaagacagctgacaacaacctctgccctctacatatatgtccacctgcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagacttgaggaagacagctgacaacaacctctgccctctacatatatgtccacctgcaa 320
Query: 121 gtagaacccatggaaataccaggtaggtgtgagaatctataattccagcttcagaagaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtagaacccatggaaataccaggtaggtgtgagaatctataattccagcttcagaagaca 380
Query: 181 gagacaactggctagccagactaacgctatcagtgagctctgggtttgactgagactctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagacaactggctagccagactaacgctatcagtgagctctgggtttgactgagactctg 440
Query: 241 cctccatgaatcatttggaagagcaatagaggatggttctagacatcaaccttgggtttc 300
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 441 cctccatgaatcagttggaagagcaatggaggatggttctagacatcaaccttgggtttc 500
Query: 301 acgtgcctagacacacatgtacatatacctacatacaaaacagaaaagtcaattaaccaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acgtgcctagacacacatgtacatatacctacatacaaaacagaaaagtcaattaaccaa 560
Query: 361 gcagggtgactactactttacagagaagcaaatcactcagtactaagggaaaatgataga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcagggtgactactactttacagagaagcaaatcactcagtactaagggaaaatgataga 620
Query: 421 gccacccctgcttggcacaaacaaacattacattcttgtctgtttca 467
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gccacccctgcttggcacaaacaaacattacattcttgtctgtttca 667
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space: 391649
Effective search space used: 391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
