BAC Information

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BAC

Clone NameMSMg01-434E07
Chromosome2 (Build37)
Map Location 161,715,718 - 161,891,963
singlet/doubletdoublet
Overlap genePtprt
Upstream geneLpin3, Emilin3, Chd6, LOC100043693, LOC100043694, LOC383769, LOC629655, LOC383770
Downstream geneLOC100043895, LOC100043896, LOC100043696, LOC497655, LOC668947, Sfrs6, L3mbtl, LOC241765, Sgk2, Ift52, Mybl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-434E07.T7 (MSMg01no434_e07.b1)MSMg01-434E07.TJ (MSMg01no434_e07.g1)
ACCAG525855AG525856
length742751
length of high quality
(start - end)		438 (36 - 473)439 (68 - 506)
definitionCHROMAT_FILE: MSMg01no434_e07.b1 PHD_FILE: MSMg01no434_e07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:38 2005CHROMAT_FILE: MSMg01no434_e07.g1 PHD_FILE: MSMg01no434_e07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(161,891,529 - 161,891,963)(161,715,718 - 161,716,156)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTCAG
ACTACCTTCTTTACCAGCTCTGGCATGGTGGTGATGGAATAGAATAATAA
AGTATTTTCTGGCTTAGGCTGGTAAGTAACAAATTCACTGAGGACCCTCC
TTCTCATAGATGTGGGCCAACAGAGACTGTGGGCTTTTCACATCCCACAG
AGATCAGAAAGCACATATCTGTTACACTCACAGCCCTTCCTTTATTTCCC
GCGGATGGATGAATTAACTCTTCCCAGAGATGCCCTTCCTCCCTTCTAAT
AGACAGAGCCTTTGTTTATATTGTAGTACCTCAGCAGACAAAACTGTGGC
TTTGAAACTGAGCAGATTGGTGGGATGCGGTGTTTGTCAAACAAGCATCT
ACTTAGACATCCCTGACACAGTGCAGATCACCCTTCAAGCAGCCGGAGGA
GCCTTGTCTGTGGACAGGGGCAGGCGTGGGTTGGATGAGGACACATTCTT
CTTTGAAATGAACAAATCTTAGTGACGGGTTAAACATCCTATTAAGCTAT
CTGACAGGAGGAAAGAAAGCAACTTGATCCTGGTCTTAGATGATGAACTG
GTCCTCAAAACTATCCTAAAAGGAGCTGGATTACCCCCAGTGGGGCATCT
GCACTATTAATTGGATTTGCTTGGTCTGGTGCGCTTTTTGAAGTCCTCCT
CAGATGCTTTTTTTTCTCAAATCGGGAACATGTTATCAGGTG

GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCACTGGAGTGAGGAGGTAAAACATCAGACATGA
AAAGGAAACAACCTGTGATGTTTAAAGAGATTCTCGGGCAACTTAATACC
GCCTCTGGGCAGTGTGTTGAAAGGACATGGTCACCAGAGGAAGGGTTCCC
TCACTAGCCATGTGACTGTGTACAGGAGGGTCCCCTACAAAGGCTCTGGT
CCCACGCAGTGCATCAAAACACAATTCCATAGAAAAAGCATAAAAGAGCC
CATGCTGGGCAAATATATTGTCTAACTTTATGTTCATCCTTTATCTCTCC
CCGGATCTTTTTTTTTTCTTCTTTTTTTCTTTAATCTGAAATTCTCCCTC
AGTAAATTTCTAAATGATATTATGTCAAGAAGTCCAGGAGTTACGCCTGG
GAGCCTCTTGAGATGATGGAGCAATTCTCCCAAGAGGTCAGTGTCCCCTC
CACAGGTACCTGGAGGGAGCTGAGAAGCTGAAGATTCTCTAAGATTAAAC
ACTTCATGTAAACACTGCTAGAGATGCGACACGCTCTTAGTCACACTATC
CCACCCCTGTATAAACTCTCTAAATATTTATTCTTTTACACCTCTTCCAC
TCCCTCTTTTTTTTTTTTTTCTTTTACTTTGTCTCTTTCTAATCATTACA
CTTCTTCCATTCTAACTTCTTCTGTTTTTCTCTTTCTACACATTCTTTGA
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no434_e07.b1 MSMg01no434_e07.b1 CHROMAT_FILE:
MSMg01no434_e07.b1 PHD_FILE: MSMg01no434_e07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:38 2005
         (438 letters)



>mm_chr2_161891326_161892163
          Length = 838

 Score =  810 bits (419), Expect = 0.0
 Identities = 431/435 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttcagactaccttctttaccagctctggcatggtggtgatggaatagaataat 63
           |||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 ggaattcttcagacaaggttctttaccagctctggcatggtggtgatggaatagaataat 579

                                                                       
Query: 64  aaagtattttctggcttaggctggtaagtaacaaattcactgaggaccctccttctcata 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 aaagtattttctggcttaggctggtaagtaacaaattcactgaggaccctccttctcata 519

                                                                       
Query: 124 gatgtgggccaacagagactgtgggcttttcacatcccacagagatcagaaagcacatat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gatgtgggccaacagagactgtgggcttttcacatcccacagagatcagaaagcacatat 459

                                                                       
Query: 184 ctgttacactcacagcccttcctttatttcccgcggatggatgaattaactcttcccaga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ctgttacactcacagcccttcctttatttcccgcggatggatgaattaactcttcccaga 399

                                                                       
Query: 244 gatgcccttcctcccttctaatagacagagcctttgtttatattgtagtacctcagcaga 303
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 398 gatgcccttcctcccttctaatagacagagcctttgcttatattgtagtacctcagcaga 339

                                                                       
Query: 304 caaaactgtggctttgaaactgagcagattggtgggatgcggtgtttgtcaaacaagcat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 caaaactgtggctttgaaactgagcagattggtgggatgcggtgtttgtcaaacaagcat 279

                                                                       
Query: 364 ctacttagacatccctgacacagtgcagatcacccttcaagcagccggaggagccttgtc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ctacttagacatccctgacacagtgcagatcacccttcaagcagccggaggagccttgtc 219

                          
Query: 424 tgtggacaggggcag 438
           |||||||||||||||
Sbjct: 218 tgtggacaggggcag 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space:   355641
Effective search space used:   355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no434_e07.g1 MSMg01no434_e07.g1 CHROMAT_FILE:
MSMg01no434_e07.g1 PHD_FILE: MSMg01no434_e07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:38 2005
         (439 letters)



>mm_chr2_161715518_161716356
          Length = 839

 Score =  833 bits (431), Expect = 0.0
 Identities = 437/439 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactggagtgaggaggtaaaacatcagacatgaaaaggaaacaacctgtgatgtttaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cactggagtgaggaggtaaaacatcagacatgaaaaggaaacaacctgtgatgtttaaag 260

                                                                       
Query: 61  agattctcgggcaacttaataccgcctctgggcagtgtgttgaaaggacatggtcaccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agattctcgggcaacttaataccgcctctgggcagtgtgttgaaaggacatggtcaccag 320

                                                                       
Query: 121 aggaagggttccctcactagccatgtgactgtgtacaggagggtcccctacaaaggctct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggaagggttccctcactagccatgtgactgtgtacaggagggtcccctacaaaggctct 380

                                                                       
Query: 181 ggtcccacgcagtgcatcaaaacacaattccatagaaaaagcataaaagagcccatgctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtcccacgcagtgcatcaaaacacaattccatagaaaaagcataaaagagcccatgctg 440

                                                                       
Query: 241 ggcaaatatattgtctaactttatgttcatcctttatctctccccggatctttttttttt 300
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggcaaatatagagtctaactttatgttcatcctttatctctccccggatctttttttttt 500

                                                                       
Query: 301 cttctttttttctttaatctgaaattctccctcagtaaatttctaaatgatattatgtca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttctttttttctttaatctgaaattctccctcagtaaatttctaaatgatattatgtca 560

                                                                       
Query: 361 agaagtccaggagttacgcctgggagcctcttgagatgatggagcaattctcccaagagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agaagtccaggagttacgcctgggagcctcttgagatgatggagcaattctcccaagagg 620

                              
Query: 421 tcagtgtcccctccacagg 439
           |||||||||||||||||||
Sbjct: 621 tcagtgtcccctccacagg 639


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space:   356900
Effective search space used:   356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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