Query= MSMg01no436_d01.b1 MSMg01no436_d01.b1 CHROMAT_FILE:
MSMg01no436_d01.b1 PHD_FILE: MSMg01no436_d01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:12 2005
(602 letters)
>mm_chr2_80567304_80568301
Length = 998
Score = 1129 bits (584), Expect = 0.0
Identities = 596/602 (99%), Gaps = 4/602 (0%)
Strand = Plus / Minus
Query: 1 gaaacaagcaagggatcatgggggatggaggatctttcaaaggaggagacatggaatgca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 gaaacaagcaagggatcatgggggatggaggatctttcaaaggaggagacatggaatgca 551
Query: 61 gtaatataaaggaggtaaaatgaataatggaacaggaagaattaaatgggacagagcatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 gtaatataaaggaggtaaaatgaataatggaacaggaagaattaaatgggacagagcatg 491
Query: 121 tgagggcaagttagaggggggctatggggaaggataatgaacactataaaaacttcttca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 tgagggcaagttagaggggggctatggggaaggataatgaacactataaaaacttctt-- 433
Query: 181 aacagtcatgtaagaatctgctactgagaaagaagaaaagtgtggagaggccatgtggag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 --cagtcatgtaagaatctgctactgagaaagaagaaaagtgtggagaggccatgtggag 375
Query: 241 acaccaagaggatttgccatgaggtctccatgtaagagcagctatgagcacacacacgaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 acaccaagaggatttgccatgaggtctccatgtaagagcagctatgagcacacacacgaa 315
Query: 301 gcaaagaaagccagagcaagactcagatgaccagtaacagggcatttatctgagtattaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gcaaagaaagccagagcaagactcagatgaccagtaacagggcatttatctgagtattaa 255
Query: 361 caacttagaagatagaataactcagaaccttaccagcatagtgccagcaacttgttaata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 caacttagaagatagaataactcagaaccttaccagcatagtgccagcaacttgttaata 195
Query: 421 aaaattttttaaataataaacaataaaataacaatctgctactgaagtttcctaaaatgt 480
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 aaaaatttttaaataataaacaataaaataacaatctgctactgaagtttcctaaaatgt 135
Query: 481 atgcatatatacacataaaagtagtttaaatgaagttattctacaacatgggaacaatat 540
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 atgcatatatactcataaaagtagtttaaatgaagttattctacaacatgggaacaatat 75
Query: 541 cccaactaaacactacatgttagcaaacctagtaccaggaataggttccccttttttagt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74 cccaactaaacactacatgttagcaaacctagtaccaggaataggttccccttttttagt 15
Query: 601 tt 602
||
Sbjct: 14 tt 13
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 998
Length adjustment: 10
Effective length of query: 592
Effective length of database: 988
Effective search space: 584896
Effective search space used: 584896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no436_d01.g1 MSMg01no436_d01.g1 CHROMAT_FILE:
MSMg01no436_d01.g1 PHD_FILE: MSMg01no436_d01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:12 2005
(547 letters)
>mm_chr2_80413180_80414126
Length = 947
Score = 1027 bits (531), Expect = 0.0
Identities = 543/547 (99%)
Strand = Plus / Plus
Query: 1 tcaggaacaaaggacaaggaaaagtaaactgtgacctgattaagttacctgggaagatcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcaggaacaaaggacaaggaaaagtaaactgtgacctgattaagttacctgggaagatcc 260
Query: 61 atgccagtaaggagctgtgactgcaactcagctatggattttacacaatactaccacagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgccagtaaggagctgtgactgcaactcagctatggattttacacaatactaccacagt 320
Query: 121 aggacagttctaactcaccagaaatctagctataaagattaattcataaatacaagtcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggacagttctaactcaccagaaatctagctataaagattaattcataaatacaagtcat 380
Query: 181 ttgggagacagaaaacttggaagaaaattatttatattgttttagaatggaaactgtcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgggagacagaaaacttggaagaaaattatttatattgttttagaatggaaactgtcaa 440
Query: 241 tatatttgaaagcatctcatgctatcaaaattattagtaatcctttactttttgagacgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatatttgaaagcatctcatgctatcaaaattattagtaatcctttactttttgagacgt 500
Query: 301 cattcaggaagtacagattttttaaaaactaaaaaacatcacactacttggctacgcctg 360
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 501 cattcaggaagtacaaattttttaaaaactaaaaaacatcacactacttggctacacctg 560
Query: 361 aatctaaacacaataacaaaaggagctgagaaacagctcagcaggtcaagggcaagcatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatctaaacacaataacaaaaggagctgagaaacagctcagcaggtcaagggcaagcatg 620
Query: 421 aggacctgagttcagatcctagcaatggaataacagcagtctgccagtaaccccagcact 480
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 621 aggacctgagttcagatcctagcaatggaataaaagcagtctgccagtatccccagcact 680
Query: 481 gggggcggatagagacaggcagatcagagagactgggtagctagccatattagcctgaat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gggggcggatagagacaggcagatcagagagactgggtagctagccatattagcctgaat 740
Query: 541 gccatct 547
|||||||
Sbjct: 741 gccatct 747
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space: 503169
Effective search space used: 503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
