Query= MSMg01no436_f03.b1 MSMg01no436_f03.b1 CHROMAT_FILE:
MSMg01no436_f03.b1 PHD_FILE: MSMg01no436_f03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:21 2005
(591 letters)
>mm_chr2_180503798_180504788
Length = 991
Score = 1112 bits (575), Expect = 0.0
Identities = 587/591 (99%)
Strand = Plus / Minus
Query: 1 ctaaaacctctggaagcaaatggcctctgtgcttcacacacaggaaaaattccattttgt 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 791 ctaaaacctctggaagcaaatggcctctgtgcttcgcacacaggaaaaattccattttgt 732
Query: 61 acagccccagcagaccctgaggcagcaagtggttcccagtccaccttggcccgtactgtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 acagccccagcagaccctgaggcagcaagtggttcccagtccaccttggcccgtactgtg 672
Query: 121 gtgccatggtctgatgaggttcagagtcagccccagaggagctctgcatgacctgcctgt 180
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 gtgccatagtctgatgagggtcagagtcagccccagaggagctctgcatgacctgcctgt 612
Query: 181 ctgactggcatggtgtgggggaacccaggactcccaagtccacagaccctgtagctattg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 ctgactggcatggtgtgggggaacccaggactcccaagtccacagaccctgtagctattg 552
Query: 241 attgtgtagaccagggggatgcctcaggtggcttctggacagtcgtccccaccagtgtgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 attgtgtagaccagggggatgcctcaggtggcttctggacagtcgtccccaccagtgtgc 492
Query: 301 cctcacacgctgcgtggaggatgctagaacatcagcacttccaaatgagacaatgttaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 cctcacacgctgcgtggaggatgctagaacatcagcacttccaaatgagacaatgttaat 432
Query: 361 tcagagctttccagtctgttcttctaccatggtgactcgggaccgaagggaggaaaacat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 431 tcagagctttccagtctgttcttctaccatggtgactcgggaccgaagggaggaaaatat 372
Query: 421 cacccagaatggacaaaaatctgtgtccagagcagagtcctgtccacgtccattcccagg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 cacccagaatggacaaaaatctgtgtccagagcagagtcctgtccacgtccattcccagg 312
Query: 481 aactgcgagggctcaccactcacgcttcctctctgaacctcaccaccgccaggtgcagcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 aactgcgagggctcaccactcacgcttcctctctgaacctcaccaccgccaggtgcagcc 252
Query: 541 agtttgggaaaaaacatgagtcctgccaacatccacgcctctatgtaggta 591
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 agtttgggaaaaaacatgagtcctgccaacatccacgcctctatgtaggta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space: 569961
Effective search space used: 569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no436_f03.g1 MSMg01no436_f03.g1 CHROMAT_FILE:
MSMg01no436_f03.g1 PHD_FILE: MSMg01no436_f03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:22 2005
(565 letters)
>mm_chr2_180357769_180358732
Length = 964
Score = 1069 bits (553), Expect = 0.0
Identities = 562/565 (99%), Gaps = 1/565 (0%)
Strand = Plus / Plus
Query: 1 ctacaagataactgaccccgagaggaaagggggacaaatatttgggtctcaattgaagca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctacaagataactgaccccgagaggaaagggggacaaatatttgggtctcaattgaagca 260
Query: 61 cacaatagagacctgtgagtacagaggcatgggggatggccatccacaaatgagagaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacaatagagacctgtgagtacagaggcatgggggatggccatccacaaatgagagaaaa 320
Query: 121 tggtaagaaatgttctaactccctgaagtgagaaggtagtgaactaactcttaggctggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggtaagaaatgttctaactccctgaagtgagaaggtagtgaactaactcttaggctggg 380
Query: 181 ctcagggatgtgggccttcagtgttctattgcccatttttattcatttagaaattaataa 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 ctcagggatgtgggccttcagtgttctattgcccatttgtattcatttagaaattaataa 440
Query: 241 atctagggtttgtatgtttttttgctctggtaaatatatttaccaagtaaatatataatg 300
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 441 atctagggtttgtatgtttttt-gctctggtaaatatatttaccaaataaatatataatg 499
Query: 301 gtttcatcactcgcaagttaaaaattccaaggtataaagtacattcactaaaccagaaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gtttcatcactcgcaagttaaaaattccaaggtataaagtacattcactaaaccagaaga 559
Query: 361 gtcttccaaaatgtctcttatcattccaaacagcaactttgtcctcattaaccatggcat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gtcttccaaaatgtctcttatcattccaaacagcaactttgtcctcattaaccatggcat 619
Query: 421 cccactgcctgccctgatacacaccagtttccatctctgagtctgacctctctaggcacc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cccactgcctgccctgatacacaccagtttccatctctgagtctgacctctctaggcacc 679
Query: 481 tcactctggtgactggcttatctcattcagcttgtcaaagggtgtccatagagcaggtgc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tcactctggtgactggcttatctcattcagcttgtcaaagggtgtccatagagcaggtgc 739
Query: 541 cagaacgtcaatcctcctcatggtg 565
|||||||||||||||||||||||||
Sbjct: 740 cagaacgtcaatcctcctcatggtg 764
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 964
Length adjustment: 10
Effective length of query: 555
Effective length of database: 954
Effective search space: 529470
Effective search space used: 529470
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
