BAC Information

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BAC

Clone NameMSMg01-436K09
Chromosome2 (Build37)
Map Location 147,599,129 - 147,599,298
singlet/doubletsinglet
Overlap genenone
Upstream geneGm114, Xrn2, Nkx2-4, Nkx2-2, LOC100043816, LOC668919, LOC668920, Pax1, LOC640914, A530006G24Rik
Downstream geneLOC100043820, Foxa2, LOC383752, Sstr4, Thbd, Cd93, Nxt1, Gzf1, Napb, Cstl1, Cst11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-436K09.T7 (MSMg01no436_k09.b1)MSMg01-436K09.TJ (MSMg01no436_k09.g1)
ACCAG527665AG527666
length731796
length of high quality
(start - end)
170 (139 - 308)---
definitionCHROMAT_FILE: MSMg01no436_k09.b1 PHD_FILE: MSMg01no436_k09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:47 2005CHROMAT_FILE: MSMg01no436_k09.g1 PHD_FILE: MSMg01no436_k09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNTTCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCACCAGCTTCCTTTCTATTTCCAACACTCATTTAAAATTGT
CTCCTGGACAGCTGTGCATCAGTTCCAGGGTGACATACTGCCAGCAATTG
CCAGCCACTGAGTGTCCTGATCTTGCTAGCATTCTTCCAGCACCATTATT
GACTTGGCGAGTGGATGACAAAAATCCAAATGTTAGCCACTAAATAGTAT
GAAACATGTCAATTTTAACCTAAATTGGGGGCAAGAACGGTCTCAAGGCC
TCTGCAGAAGGAGAGCTCAGTTTTTTTCCCAAAAGACAAGAGGAAAGGGC
CGTGTTTGAAGAATAACAATCAGCGGCTGAAAGCTATTAAGTTCACTCTT
CTAGTTCAAAGGGATTCGAAATGGCAATTTGTCAGGCAACTGTTGTCACT
TTAGATGCCCCCAGTCGCTTCCTTTGAAGCTCTTGATTGACTACAGGAGG
CAACGCCAGATTCTTCTAAAGACAGATTTCCACAGTTGAACACATTTATG
TCACAGTAATTATGACTCTTCCCAAATTTAATCAACAAAAGGCAAAAGAG
TGCGAGTCTGACAAAACATTCACAGGCTTGGGCCCAGTCCAGGCAGTGGC
CCAGTGTCTATCTGTGTACTTGGTCATCTGGGTGTGTTTGTTCACCTCAC
AGTGCTATTCATTTGTTGTAGATTCAGGTTN
AAGAGGCAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTTCATCTGCCTATATTCAT
CTGTTGCGTTAGGATGAAAACAATGAAAGGAATCTCTATGATTGTAGGAA
AAGGTTCTGAAACGGCACATTCAGCTTATTGTGAATATTCCCTTTTTTTG
CCACCTAAGTCTAAGTCTTAGTTGTACTCGCCTTGTGACCCACAAAAGAA
CTGGAATCCTCTTAGGCTTATAACACTTGCTCCATGCACACAAAGTTATG
TGCTCAGAAATACCACACTGATTCTCTTTCATACCTGCAGTTAAGCATGA
AGTCTCTATCGTCTGATTATTGCAATTTACATGTTTTAATTATTTAAAAT
TTAATACATTGAATTATTATCTGAACAGGTCCTGTTTTATTCCTATTAAT
TTTGAAGCCTAGGTATCCCTTCTATTCCTGTACCAAAATGTATCGCACCG
CCTCGCACGCGCTACATATAAACACTGATATTATATCGCCCCCGCCCTGT
ACTTGCTTATTTTTTCCTATGTATCCTTTCAGGCTTAATTTGCATCTGTT
ATTTCTCGCTTGTCTATTTAATTCTTCGACGCCTTATTATGGTGCTGCTC
CACCCCTCTATTTTTTTTTTTTTTTTTCACAGTTTTTTCTTTTTTATATT
TTCCATCCTACATTCGTCCTTATTCACTTTTTCCCTCACATTGATATATC
AATTCTAACCTTCTTTATTTTATTATTCTCTTCTACTCTTACATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no436_k09.b1 MSMg01no436_k09.b1 CHROMAT_FILE:
MSMg01no436_k09.b1 PHD_FILE: MSMg01no436_k09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:47 2005
         (170 letters)



>mm_chr2_147598929_147599498
          Length = 570

 Score =  329 bits (170), Expect = 6e-95
 Identities = 170/170 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgccagcaattgccagccactgagtgtcctgatcttgctagcattcttccagcaccatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgccagcaattgccagccactgagtgtcctgatcttgctagcattcttccagcaccatta 260

                                                                       
Query: 61  ttgacttggcgagtggatgacaaaaatccaaatgttagccactaaatagtatgaaacatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgacttggcgagtggatgacaaaaatccaaatgttagccactaaatagtatgaaacatg 320

                                                             
Query: 121 tcaattttaacctaaattgggggcaagaacggtctcaaggcctctgcaga 170
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaattttaacctaaattgggggcaagaacggtctcaaggcctctgcaga 370


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 170
Length of database: 570
Length adjustment: 8
Effective length of query: 162
Effective length of database: 562
Effective search space:    91044
Effective search space used:    91044
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)