BAC Information

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BAC

Clone NameMSMg01-436O06
Chromosome2 (Build37)
Map Location 36,492,970 - 36,493,505
singlet/doubletsinglet
Overlap genenone
Upstream geneDab2ip, Ttll11, Ndufa8, 1700010A17Rik, Lhx6, Rbm18, LOC100042236, Mrrf, LOC100040493, Ptgs1, Olfr334-ps1, Olfr335, Olfr336-ps1, Olfr337-ps1, Olfr338, LOC675440, Olfr339, Olfr340, Olfr341, Olfr342, Olfr343-ps1, Olfr344
Downstream geneOlfr345, Olfr346, Olfr347, Olfr348, Olfr50, Rpl18p, Olfr3, Olfr349-ps1, Olfr350, Olfr351, Olfr352, Olfr353, Olfr354, Olfr355, Olfr356, Olfr357, Olfr358, Olfr359-ps1, Olfr360, Olfr361, Olfr362, Olfr364-ps1, Olfr365, Olfr366, Olfr367, Olfr368, Pdcl, Rc3h2, Zbtb6, Zbtb26, Rabgap1, Gpr21, 6430510M02Rik, Strbp
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-436O06.T7 (MSMg01no436_o06.b1)MSMg01-436O06.TJ (MSMg01no436_o06.g1)
ACCAG527851AG527852
length738735
length of high quality
(start - end)		533 (52 - 584)537 (82 - 618)
definitionCHROMAT_FILE: MSMg01no436_o06.b1 PHD_FILE: MSMg01no436_o06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:05 2005CHROMAT_FILE: MSMg01no436_o06.g1 PHD_FILE: MSMg01no436_o06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNTTCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTTTTACAACTACTCTGGAAATCATTCTAACACTGTCTCAGA
AATATTGAAAATATTTCTACCTGAATATCCAGCTATATCACCCCTGTGAA
TCTACCCAATAATGTTCTAACATCCAACAAAGACATTTACTCCACTATGT
GCATAACAGATATAATCATAATAGCCAGAAACTAGAAACAACCTAGATAT
TCCTCAATGTAAGAATGGATAAAAAACATGTGGTACATCTACTCAATGGA
ATACTATTCCGTTCTGAAAAACAAGGGCATTATGAATTTTTTCAGACAAA
TGGTTGGAACTAGAAAATGTCCCCAGTCAGGTAATGCAAACCCAAAAGAC
ATACATGATATTAACTTACTTATAACTGGATATTAGCCACAAGGTATAGG
ATAACCACTCTACAATCCACAAACCTAAAAAAGCTAAACAGGAAGGAAGG
CTCAAAAGAGGATGCTTGAACCTCATTTAGTCATAGAAGGCAGATGGAGA
GAGATAGCTGTGTGGGAGAAGGAATGGAAAAGGGGAATTGGTGGTTTGGG
GATTGGTTNNNNNNTNTTNNTTNTTTTNTTTNTTTTTTNTTTTGTTTTTT
TTTTTTTTTTTTTTTTTNTTTTTTTTTTNNTTTTTTTTTTTTTGTTTGTT
TTTTTTTTTTTTGTNTTTTTTTTTTNTTGTTTTTTTTN

ATNCCCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGTCGTATATCCATT
GCAAGAATCAGAAGAATAATCAGTTCAGATAGATATGTGAACATGTACAT
TTTCTACATATCCTGGAAAGGTCATGTGAGCTCTAATTTTGTAAACCATG
TACAAGACCTAAGGTGCAATCCCTGTCCCCAGATCCAAATTAGATCCAAA
TACAGGATAAAATTGGTTCATTGTCACTGACTCCCTTAGGAAAAAACTAT
TTTATCAAGCAGGCAAGAGAGTCCCTTTGCACTCAAGAACTAAAAGTAGC
AATCAAAGCAAGATTCTTCATCATTTTTTTTCCTGTGTAAAAATGACACC
TGTGATAGTTTGACATTTAATAACATGATACTGTCATACAAAGACACAAA
ACAGTTGAAAACAGAATCTAATATAATTCATGGATAATAATTTTAAATAC
TATTACCATAAAAAGTCTTGGTCAACCAACATAATAATATGGAAAAACTT
AGGACATATCTGTGGATTTCTTGCATTGCACATAAAGAATTAGACATTTA
CTCACGTTTTTAAGGCAGNCCTTCTGGNTGNATTTTTTATGTATTAGAAC
TGATATTTTCTTCATTTAAATTTCAAATGCTATCCCGAAAGCCCCCTATA
CCCTCCCCCCCACCCTGCTCCCCAACCCAAATATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no436_o06.g1 MSMg01no436_o06.g1 CHROMAT_FILE:
MSMg01no436_o06.g1 PHD_FILE: MSMg01no436_o06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:05 2005
         (537 letters)



>mm_chr2_36492770_36493705
          Length = 936

 Score =  959 bits (496), Expect = 0.0
 Identities = 527/538 (97%), Gaps = 3/538 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcagtcgtatatccattgcaagaatcagaagaataatcagttcagatagatatgtgaa 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 tttcagtcgtataaccattgcaagaatcagaagaataatcagttcagatagatatgtgaa 677

                                                                       
Query: 61  catgtacattttctacatatcctggaaaggtcatgtgagctctaattttgtaaaccatgt 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 676 catgtacattttctacatatcctagaaaggtcatgtgagctctaattttgtaaaccatgt 617

                                                                       
Query: 121 acaagacctaaggtgcaatccctgtccccagatccaaattagatccaaatacaggataaa 180
           |||||||||||||||||||||||||||||||||||||||||||  |  ||||||||||||
Sbjct: 616 acaagacctaaggtgcaatccctgtccccagatccaaattagaggc--atacaggataaa 559

                                                                       
Query: 181 attggttcattgtcactgactcccttaggaaaaaactattttatcaagcaggcaagagag 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 558 attggttcattgtcactgactcccttaggaaaaaactattttgtcaagcaggcaagagag 499

                                                                       
Query: 241 tccctttgcactcaagaactaaaagtagcaatcaaagcaagattcttcatca-ttttttt 299
           |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 498 tcccttcgcactcaagaactaaaagtagcaatcaaagcaagattcttcatcatttttttt 439

                                                                       
Query: 300 tcctgtgtaaaaatgacacctgtgatagtttgacatttaataacatgatactgtcataca 359
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 438 tcctgtgtaaaaatgacacctgtgataatttgacatttaataacatgatactgtcataca 379

                                                                       
Query: 360 aagacacaaaacagttgaaaacagaatctaatataattcatggataataattttaaatac 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 aagacacaaaacagttgaaaacagaatctaatataattcatggataataattttaaatac 319

                                                                       
Query: 420 tattaccataaaaagtcttggtcaaccaacataataatatggaaaaacttaggacatatc 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tattaccataaaaagtcttggtcaaccaacataataatatggaaaaacttaggacatatc 259

                                                                     
Query: 480 tgtggatttcttgcattgcacataaagaattagacatttactcacgtttttaaggcag 537
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 258 tgtggatttcttgcattgcacataaagaattagacatttactcacttttttaaggcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 936
Length adjustment: 10
Effective length of query: 527
Effective length of database: 926
Effective search space:   488002
Effective search space used:   488002
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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