BAC Information

Click to search

BAC

Clone NameMSMg01-437G04
Chromosome2 (Build37)
Map Location 127,803,733 - 127,804,067
singlet/doubletsinglet
Overlap geneAcoxl
Upstream geneAp4e1, Blvra, Ncaph, 1700041B20Rik, 1810024B03Rik, LOC100043408, Ascc3l1, Ciao1, Tmem127, ENSMUSG00000074822, Stard7, Dusp2, Astl, Adra2b, A530057A03Rik, Fahd2a, Kcnip3, Prom2, Zfp661, Mrps5, Mal, LOC668892, Mall, Nphp1, 1500011K16Rik, Bub1
Downstream geneBcl2l11, LOC100043424, LOC100043729, LOC383791, LOC100043730, Gm355, Anapc1, Mertk, Tmem87b, 1600015H20Rik, Zc3h8, LOC100043735, LOC100043736
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-437G04.T7 (MSMg01no437_g04.b1)MSMg01-437G04.TJ (MSMg01no437_g04.g1)
ACCAG528231AG528232
length759789
length of high quality
(start - end)
336 (73 - 408)346 (81 - 426)
definitionCHROMAT_FILE: MSMg01no437_g04.b1 PHD_FILE: MSMg01no437_g04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:45 2005CHROMAT_FILE: MSMg01no437_g04.g1 PHD_FILE: MSMg01no437_g04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCAACAGGAGCC
GCGGAATTCTGCAATTTTCCTATAGTTGAGTAATGATCCCCAAAGAAGGG
CATATTCCTACCTCTGGAACCTGTGCATGTCATCTCATATGGCAAAAGGA
CTTGGGAGCTGTGGCTAGAGACCTGGGGTACACAGCTGTGCTAATGTGAA
CAGAAATATTTGTGTACAAAAGTGAATGGGACAGAGAAGAGAAGAGGAGG
GAAGAGGCAGAGATGCAGCTCTAGGAAGCAAGTGGGCATTGCTGACTTTG
AAGAATGAAGGGGTGGGGCAAGACTATGTCATTAGGTGATCAGCCATTTT
ATTTGTAATAGTTCCAAACAGGAAATAAATGAAGAGTTCATCAATAAGCA
AATACACAAAACAAGAGTAGTATATTCAATACCTTAAATGGAATACTAAT
TGTCAGGAGAGAATAGCAGTGACTAATCAGCGTTGTAACAAGGATGAATC
CCAAATCACAGCACTAACTGAAATAAGGAAGACACTACATATGCAGCACA
GTCCTACCATAAGTAAGTCTACCATGAGGCGCATAGACAATGCCCACCAT
GACCCTGGGATGCCGCTGTGAGCAGGTATATATCGTTCAATCGTGCGACC
TTTTCTGCACAGTGCCCTTACCGCTTTTCTTCTCTTTCCACCCCACCTCT
CCACCCCACCTCTTAACCCTTTCTTCTTTTCTACCTTTCCCCTGCCCTTT
CATTTTCTN
NCCGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTATTCATTGTTAGTTGAA
ATGCGACCTAGTATGGTCATTGTGGAAATCAGTATGGTGGTCTCACAACA
AGAACAAAACCACACACACACACACACACACACACAAAACCCCAGAAAAC
TAGAACTGTTTATGAACTAGCTTCCTACTCCAGGGCACACAAAGGTTTCT
ATCTTTTACAAGAGAAACCTGCACATCCATGTCAATTGTTCCTCTATTCA
CAATAGCAAAGAAATGGAATCAGCCCATATGTTTATCAATCAACTGATGG
ATGTATAATGACAATGTGGAATCATACACAATAAAATTCTTTTCAGATGT
ACACCATGAAATTTGCATAAAAATACATGGGGTTAGAAAGTATAGACCTT
ATGGGAAAAAGATGTTTACAAAGGAGGAGGTTACTTTGATTGACGATACC
TGCATGTGTAAAGTTTGCTATGCCTCGTGAACTACTACCCCCCGTTTCCC
AACGCCCTCCCTCTTTATTTATACCCTTTTTTTTTCGCATTAATGCCTTT
CTGTTCCCTCTCTATTTCTTATCCTTTTTCTCCATCCTTTCTTTCTTTTC
TCTTCTTCTTCCGTTTCCTCCCTTCTAATTCTCTTCCCCCTTTTTTTTCT
TTATCCACATTCTTTTTACTTTTCTCTTGATTCTTTTACCCTTTCTCCCC
TCTTCTTCTTTCTTTTTTATCCTCTACCTCTTCTCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no437_g04.b1 MSMg01no437_g04.b1 CHROMAT_FILE:
MSMg01no437_g04.b1 PHD_FILE: MSMg01no437_g04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:45 2005
         (336 letters)



>mm_chr2_127803438_127804172
          Length = 735

 Score =  561 bits (290), Expect = e-164
 Identities = 326/338 (96%), Gaps = 5/338 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagttgagtaatgatccccaaagaagggcatattcctacctctggaacctgtgcatgtca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 tagttgagtaatgatccccaaagaagggcatattcctacctctggaacctgtgcatgtca 571

                                                                       
Query: 61  tctcatatggcaaaaggacttgggagctgtggctagagacctggggtacacagctgtgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 570 tctcatatggcaaaaggacttgggagctgtggctagagacctggggtacacagctttgct 511

                                                                       
Query: 121 aatgtgaacagaaatatttgtgtacaaaagtgaatgggacagagaagagaagaggaggga 180
           ||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 510 aatgtgaacagaagtatctgcgtacaaaagtgaatgggacagagaagagaagaggaggga 451

                                                                       
Query: 181 agaggcagagatgcagctctaggaagcaagtgggcattgctgactttgaagaatgaag-g 239
           |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 450 agagtcagagatgcagctctaggaagcaagtgggcattgctgactttgaagaatgaagag 391

                                                                       
Query: 240 ggtggggcaagactatgtcattaggtgatcagccattttatttgtaatagttccaaacag 299
           || |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gg-ggggcaagacaa-gtcattaggtgatcagccattttatttgtaatagttccaaacag 333

                                                 
Query: 300 gaaataaatgaag-agttcatcaataagcaaatacaca 336
            |||||||||||| | ||||||||||||||||||||||
Sbjct: 332 aaaataaatgaagca-ttcatcaataagcaaatacaca 296


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 735
Length adjustment: 9
Effective length of query: 327
Effective length of database: 726
Effective search space:   237402
Effective search space used:   237402
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)