BAC Information

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BAC

Clone NameMSMg01-437N11
Chromosome2 (Build37)
Map Location 88,897,831 - 88,898,283
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175, Olfr1176, Olfr1177, Olfr1178, Olfr1179, Olfr1180, Olfr1181, Olfr1182, Olfr1183, Olfr1184, Olfr1185-ps1, Olfr1186, Olfr1187-ps1, Olfr1188, LOC668528, Olfr1189, GA_x5J8B7W4NS2-37772-38277, Olfr475-ps1, Olfr526-ps1, Olfr1192-ps1, Olfr1193, Olfr1194-ps1, Olfr1195, Olfr1196, Olfr1197, Olfr1198, Olfr1199, Olfr1200, Olfr1201, Olfr1202, Olfr1203, Olfr1204, Olfr1206, Olfr1208, Olfr1209, Olfr1211, Olfr1212, Olfr1213, Olfr1214, Olfr1215, Olfr1216, Olfr1217, Olfr1218
Downstream geneOlfr1219, Olfr1220, Olfr1221, Olfr1222, Olfr1223, Olfr1224-ps1, Olfr1225, LOC435676, Olfr1226, LOC100042983, GA_x5J8B7TTH1T-1160-261, Olfr1227-ps1, Olfr1228, Olfr1229, Olfr1230, Olfr1231, Olfr1232, Olfr1233, Olfr1234, Olfr1235-ps1, GA_x5J8B7W62NC-668773-668438, Olfr1237-ps1, Olfr1238, Olfr1239, Olfr1240, Olfr1241, Olfr1242, Olfr1243, Olfr1244-ps1, Olfr1245, Olfr1246, Olfr1247, Olfr1248, Olfr1249, Olfr1541-ps1, Olfr1250, Olfr1251, GA_x5J8B7TT7VM-20-924, Olfr1252, GA_x5J8B7W62NC-992588-991951, Olfr1253-ps1, Olfr1254, Olfr1255, Olfr1256, Olfr48, Olfr1257, Olfr1258, Olfr1259, Olfr1260, Olfr1261, Olfr1262, Olfr1263, Olfr1264, Olfr1265, Olfr140
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-437N11.T7 (MSMg01no437_n11.b1)MSMg01-437N11.TJ (MSMg01no437_n11.g1)
ACCAG528577AG528578
length769753
length of high quality
(start - end)		516 (52 - 567)453 (81 - 533)
definitionCHROMAT_FILE: MSMg01no437_n11.b1 PHD_FILE: MSMg01no437_n11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:22 2005CHROMAT_FILE: MSMg01no437_n11.g1 PHD_FILE: MSMg01no437_n11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCACAATGTTGGAATCTTGAATGGTTGAGAAACACCTAAAG
AAATGTTCAAAGTCCTTAGTGATCAAAAAAATGCAAATCAAATTGATCCT
GAGATTCCACCTTACACCAGTCAGAATGGCTAAGATCAAAACCACCCCTG
ACAACACATGTTGAAGAGGATGTGGAGAAAAAGGAACACTGCTTCATTGC
TAGTGGGATTGCAAACTGGAAATTTTGAATTCTGAAAATCAATCTGGAGT
TTCTTCAGAAAATTGGAAATAGAAACCTGAAGACCCAGCCGTGCCACTCT
TGTGAATATACCCAAAAGATGGCCCACCACACCACAGGGGTATGTGTTAC
ACTATTTTCATAGCAGCCTTATTTATGATAGCCTGAATCAGGAAACAACC
TAGATCTACCACGACAGAAGAATGGATACAGAAAATATGGTTCTTCACAC
AATGGTATACTACTCAGCTATTAAGAATGAGGATGCCCTGACTTATGCAG
GCAAATGGATGGAACTAGAAAATATCATCCTAAGTGAGGTAACTCAGACA
CTAAAGGACATGCATGGTATGTACTCACTAACAAGTGGATATTCCCCCCC
CAAAAAAAAAAAACCAAAACCCAAACCTTATATAATATAACCAACAACAT
GTTGAATAACCCAGAAAACTTCCCCCAAAATTCAAAGGGCCCCCAAGCTG
AAGGCCCCCTGGAACACCN

NCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATGGGCCCTAAGTCTAGA
CAAAGAACCACAAGCAAACTATGACTGCTGAGGGACTGAGAATCACTGCC
AGGGATGAGCTCCCTGTTAGGTATCCAATAACAAGGGGTCAGCCCTTATA
TCATTGACATACGTGCAACAATATACAGACTGAGCAGATTGTGTTTTTAA
ATTTTTCCATTTCCATAGTATGTAAAAATAATAATGTTTTAATCAGCCAA
CAATTTGAAATGTTATGAAAAAGAAGATCAGAAGAGGATAGAGTGAGGGT
GCATGGGAAGGGTTAGAGGGAGAAAAGAAAAGGAAGAAGTGATTTTACTA
TATCCTAGTTGGAAAATAAATAGAGTATAACAAAGAAAATAGTCAAATAT
TTAGCCAAATATAAATAATATTTTTTGTTTAGATACGGCAAATTTTCTCA
CTTTTTCTACATTATCTTGACAAATGAATGCACAGTATAGTAGTATGGCA
GACTCAAGTGAATCATGTGAGGTATGATATAAGCCTCGTTTATGTTATTC
CTGTTTACCTAACATTAGGCTAACTAAAATGATAAATACAAATTAACCAA
TAATCTACCTTCCGTTGTGGAAAGATTTGCGAAATGGTTCTGACTTTTTT
TTCCCCCTCTTGTATTTCTCCATTGCATACTATATCCTTTTCTCTTTTCT
TCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no437_n11.g1 MSMg01no437_n11.g1 CHROMAT_FILE:
MSMg01no437_n11.g1 PHD_FILE: MSMg01no437_n11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:22 2005
         (453 letters)



>mm_chr2_88897631_88898483
          Length = 853

 Score =  876 bits (453), Expect = 0.0
 Identities = 453/453 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatgggccctaagtctagacaaagaaccacaagcaaactatgactgctgagggactgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcatgggccctaagtctagacaaagaaccacaagcaaactatgactgctgagggactgag 260

                                                                       
Query: 61  aatcactgccagggatgagctccctgttaggtatccaataacaaggggtcagcccttata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatcactgccagggatgagctccctgttaggtatccaataacaaggggtcagcccttata 320

                                                                       
Query: 121 tcattgacatacgtgcaacaatatacagactgagcagattgtgtttttaaatttttccat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcattgacatacgtgcaacaatatacagactgagcagattgtgtttttaaatttttccat 380

                                                                       
Query: 181 ttccatagtatgtaaaaataataatgttttaatcagccaacaatttgaaatgttatgaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttccatagtatgtaaaaataataatgttttaatcagccaacaatttgaaatgttatgaaa 440

                                                                       
Query: 241 aagaagatcagaagaggatagagtgagggtgcatgggaagggttagagggagaaaagaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagaagatcagaagaggatagagtgagggtgcatgggaagggttagagggagaaaagaaa 500

                                                                       
Query: 301 aggaagaagtgattttactatatcctagttggaaaataaatagagtataacaaagaaaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggaagaagtgattttactatatcctagttggaaaataaatagagtataacaaagaaaat 560

                                                                       
Query: 361 agtcaaatatttagccaaatataaataatattttttgtttagatacggcaaattttctca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtcaaatatttagccaaatataaataatattttttgtttagatacggcaaattttctca 620

                                            
Query: 421 ctttttctacattatcttgacaaatgaatgcac 453
           |||||||||||||||||||||||||||||||||
Sbjct: 621 ctttttctacattatcttgacaaatgaatgcac 653


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space:   373449
Effective search space used:   373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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