BAC Information

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BAC

Clone NameMSMg01-439D11
Chromosome2 (Build37)
Map Location 40,812,672 - 40,813,117
singlet/doubletsinglet
Overlap geneLrp1b
Upstream geneLOC100042604, Magmas-ps, LOC666531
Downstream geneLOC100042629
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439D11.T7 (MSMg01no439_d11.b1)MSMg01-439D11.TJ (MSMg01no439_d11.g1)
ACCAG529624AG529625
length7291,664
length of high quality
(start - end)
446 (73 - 518)---
definitionCHROMAT_FILE: MSMg01no439_d11.b1 PHD_FILE: MSMg01no439_d11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:16 2005CHROMAT_FILE: MSMg01no439_d11.g1 PHD_FILE: MSMg01no439_d11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:16 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXATACAAGACAGGCGCGGAAAT
CCTGCCCTGACTTGAACATGTAAGATGACATAAACTCTTTCCTTTGAAAT
TTGTTTATTGTTACGTTGCTTTATTACAGCAATAAAAAAACCAAACTAAT
ACAGACTTACATTTTTAAGTTTATAGCAGATAAGCTGCACGATGCAAGTA
GAAGTGTATCATAAGGGAAATATTATAAAAATAGACATAACTAGTCCTAA
AGCCTGCTGAGATAATACCAGAAGTAGTATAAACTATTAAAAATATTTAT
ACTGATGAAAAATTTTTTTAGTACATATTATAATATTGCCAAATACTGTT
CTATGCTTCTTTTTAAAAAATAACTTCTCAATAAAACTCTGTGATGATCA
GTGGTAAGTCTATCCGCTATGGGCTGTGTATACTGCAACATGAATTGAAC
TCGCATAGCAATGGTTTTATTTGTAACATCTTTTTCTACTCAACAATAAC
TTTATTAGTATTAAATACAAAATAGTTTAGTTAAAAAATATAACACAATG
CAGTCAATACCTGTCAATATATACATCTGAAGAATCAAGCAAACATTAAT
TAACTCCTATAAGAAATGAGAGACAGGGTTAAATATGTTTCCTTGGTAGC
AACATAATGAGGGTAGCGAACGATATAATCACTATTCAACCTTTACAGCG
AAAGTCCAACTTACCTAACGATCCCCTTC
ACCCACATGTGCTTTATGTGTTAGACGTTGTGCCGTGCNGCGNGGCGCGC
GATCACACTCTCCCTAGTACGCATGGGCTGTGATGTGTCGCGCCATCTTG
TGGCTGCGCACCCCACACAAGCTANACTAAACTACATACATTACGATGCT
ACTTGCTCCCTGCGCATGAATATAACTCGATAAAGTTAAGGAGGAACGAG
ACAANCAACANCGCGACAGCCGGCGCTCACGAGTGTGCGATGTATGTTGC
TATACGCGTAGAAGACGCTCAGTACGCAGACTATATACTACGCTACATAC
TCACGTTATGCACACCACGCCGCTCGTCGTGCAGTTTTGACGACGCAACG
CTCACAACTAGATACGTTGTGAGTCGCGCAGATATCGAANATAACTCGCA
GCTGTAGATGATATGTGTGTGCGCGTAGAGACACGATGTAATGTAGTGCG
CACGAAGTATTGATCACAACTATTATATCGTATGAACATAATGCACGAGT
AGTGTTATTTATGAGTATATTGTATCAGCAGCGCCGCGCGTTGCGTCGTC
ACTCATATTAGGCACCTCCTAACGTATACAATACTACACACACTAAATCA
CTGGCGATAGGACATACGACCACCGGCGCTGTAGATGTATATTTGTTCGA
NATGAACGACGCGCGCGGCGACGTAGCGCGCGCTCGGCACCACACACATA
TATACGGAGGTGAGTGTCGAACATCTCCGCGTGTGATACGTCTGATATTG
TCGGACGATAGANGCATTAAGNTAACAATCGAGATACTAGGAGCGAATGA
GGTGAGTGTGTGAATCGCGAAGGAGAACGAAGACACACGTATATAGGACC
GCAGAANGATACACGCGCGCAACACGCGTCGCCGCCAGCGTATCATTATA
GCGGCGANTCGAGTCGCGCGCGCACGNTGTATACTNTATGTAGATGANTA
GCTCGGTCTAATACCTACACGACGACGCGCCTATATACGTAGTGTATCGA
TATATACGCGCAGCTGTGATTCGCGCGCTAATATTNAGATGCGACTCGCA
CGCGCATATTNTCTGACACCCCCCGCCGCGCGTAATGTNACCACCGTCGC
GCGAATATCGACGTCTCTCGCATGATCGCGACAGCGANCCTCTCTCTGCG
CACNCGCGCGTGTATATATATGCGCATACTACTTGACTGCTCTGTGTGCA
GAATGTAGTGATTAGTATACACCACCTAGTTGGCGCGACATGTGTTCTGT
GATCAGTCANCGGTATAGCGCGATATAGATCATGTGTATGACGATCTGAA
GATGTGTATCTATCACTATATATATCTCTGTGACGACACGCTGCGAATGT
GTCGTAGAGTNANAGACAGTNATACACTGCTCGTACCCGCGCCGTGTATN
CTTGCCAGTAAGTACAGCGCATTAGATATACGCGTTTAGTGATATATCTG
ATAACACNCAATATCACANANAGTTTTATGTGCCCGCACATATCGATGAT
CTNCGCTCCANACCGTNCGCACATGATGNGATTCCTGCTACGAGCGTCTA
GCGTGATACTATACATCGCGAGACGCGCGCGATATTTGATATTATNAGTC
ACAATATCGTCACACGTCNTAGTAGTATACTACTGACGACACACTGCGCG
ACGCATGCACACTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_d11.b1 MSMg01no439_d11.b1 CHROMAT_FILE:
MSMg01no439_d11.b1 PHD_FILE: MSMg01no439_d11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:16 2005
         (446 letters)



>mm_chr2_40812391_40813236
          Length = 846

 Score =  781 bits (404), Expect = 0.0
 Identities = 435/452 (96%), Gaps = 12/452 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   agatgacataaactctttcctttgaaatttgtttattgttacgttgctttattacagcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 agatgacataaactctttcctttgaaatttgtttattgttacgttgctttattacagcaa 668

                                                                       
Query: 61  taaaaaaaccaaactaatacagacttacatttttaagtttatagcagataagctgcacga 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 667 taaaaaaaccaaactaatacagacttacatttttaagtttatagcagataagctgcacaa 608

                                                                       
Query: 121 tgcaagtagaagtgtatcataagggaaatattataaaaatagacataactagtcctaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 tgcaagtagaagtgtatcataagggaaatattataaaaatagacataactagtcctaaag 548

                                                                       
Query: 181 cctgctgagataataccagaagtagtataaactattaaaaatatttatactgatgaaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 cctgctgagataataccagaagtagtataaactattaaaaatatttatactgatgaaaaa 488

                                                                       
Query: 241 ttttttt------agtacatattataatattgccaaatactgttctatgcttctttttaa 294
                 |      ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 487 ------tgccccaagtacatattataatattgccaaatactgttctatgcttctttttca 434

                                                                       
Query: 295 aaaataacttctcaataaaactctgtgatgatcagtggtaagtctatccgctatgggctg 354
           |||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||
Sbjct: 433 aaaataacttctcaataaaactctgtgatgatcagtggtaagtctatttggtatgggctg 374

                                                                       
Query: 355 tgtatactgcaacatgaattgaactcgcatagcaatggttttatttgtaacatctttttc 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tgtatactgcaacatgaattgaactcgcatagcaatggttttatttgtaacatctttttc 314

                                           
Query: 415 tactcaacaataactttattagtattaaatac 446
           ||||||||||||||||||||||||||||||||
Sbjct: 313 tactcaacaataactttattagtattaaatac 282


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space:   364496
Effective search space used:   364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)