XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAAATCCGCGGAATTCTTT
CTTATCTCAGTACCCCATTTTAAATAGGGTTATTTGGTTATCTGGAGTCT
AACTTCTTGAGTTCTTTGTATATATTGGATATTAGCTCTAGAAGTGCTAA
TTGGAAACTCATAGTTCTGAGTACCTCAAAAAAGAAACAACAAAGAACAT
ACACTGCAGCTTGACAGCACAACTGAAAGCTTTAGAACAAAAAGAAGTAA
ATAGACCCAAGAGGATTAAAAGTCAGGAAATAATCAAACTCAGGGCTGAA
ATCAACCAAGTATATTCTACTAAACCAGGAGCTAGTTCTTTGAGAAAATC
AACAAGATAGATAAACCCTTAGGCAAACTAAGCAGAGGGCACAGAGACAG
TATCCAAATCAAAAAAAAAAAAATCAGAAAAGAAAAGGGAGACATAACTA
GGGAAACTGAAGAAATCAAAAAAATCATCAGATCCTACTACAAAAGCCTA
TATTCAATGAAACTGGAAAATCTGAATGAAATGGACAACTTTCTAGAGAG
GTACCAGGTACCAAAGTTAAATCAGGGTCAGATTAATGATCTAAACAGAC
CNTTAACCTCTAGAGAAATAGAAACAATCCCTAATAGTCTCCCACCCAAA
AAAAAAAAAAAAAATAAAAAATAAATAAATTTATTTTTTTTTTTGATAAG
AAGGATTNNGGGNNGAAAGGGTTATAAAGCTCCGTCCCAATGGGTTTATT
TCCTA

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTGACACACAACTTCAGACAATGTTCATA
CCACAGCCTGCACTGGATAGCTCATCACTCCCGTCGGGACAGTCTCTCTC
ACCATCACACAGCCAGTGTTGGGGCACACAGGCATGGGAGCCCTGGCAGC
TGAACATGTCAGCAGCACAAGTGACTGCACCTTAAACCCAGAAAAAAAAA
GTGGTATTAAACCCTGCACATCCACCAGAAAATGCCCACTGTTCCTCAGA
TCTGTAGAAATAAGCTTAGAATCATGCATGCAGTGGAGGAAAAATAATTA
TGAGAATCATGGCTCCTTCTGTCCCAATAATTCTTCACATATTCTTAAGA
ATATATTCTTTTCTAATTGCAAGTGCTGTCCAGTTTATAGCTGTGTCACC
TTCATCTTAAAAATTATGTCGAAGCATGCTCTGGAATTCTTAAGTAAATA
ACATGGTGAAAGAATTGAGCCTGCATAGGTGGGAACAATAGCAGGTATGG
TGAGGAAATATTTCATAGCTTAGCATGTATGGATTACTTATTGTGTCACC
TCCTTTAATCCTGCAGAATTATTACTTATCACACTTCACAGATAAAGTCA
GCAGCTTCCATAAGCCCATTAACTTGGACAGATTATTACTGCTTATCTCC
CCAACCTGTACCGGGTGGTCCTATTATGCCTTN

Query= MSMg01no439_e18.g1 MSMg01no439_e18.g1 CHROMAT_FILE:
MSMg01no439_e18.g1 PHD_FILE: MSMg01no439_e18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:23 2005
         (473 letters)



>mm_chr2_40737429_40738302
          Length = 874

 Score =  878 bits (454), Expect = 0.0
 Identities = 469/474 (98%), Gaps = 1/474 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgacacacaacttcagacaatgttcataccacagcctgcactggatagctcatcactc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgacacacaacttcagacaatgttcataccacagcctgcactggatagctcatcactc 260

                                                                       
Query: 61  ccgtcgggacagtctctctcaccatcacacagccagtgttggggcacacaggcatgggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccgtcgggacagtctctctcaccatcacacagccagtgttggggcacacaggcatgggag 320

                                                                       
Query: 121 ccctggcagctgaacatgtcagcagcacaagtgactgcaccttaaacccagaaaaaaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccctggcagctgaacatgtcagcagcacaagtgactgcaccttaaacccagaaaaaaaaa 380

                                                                       
Query: 181 gtggtattaaaccctgcacatccaccagaaaatgcccactgttcctcagatctgtagaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtggtattaaaccctgcacatccaccagaaaatgcccactgttcctcagatctgtagaaa 440

                                                                       
Query: 241 taagcttagaatcatgcatgcagtggaggaaaaataattat-gagaatcatggctccttc 299
           |||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 taagcaaagaatcatgcatgcagtggaggaaaaataattattgagaatcatggctccttc 500

                                                                       
Query: 300 tgtcccaataattcttcacatattcttaagaatatattcttttctaattgcaagtgctgt 359
           |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtcctgataattcttcacatattcttaagaatatattcttttctaattgcaagtgctgt 560

                                                                       
Query: 360 ccagtttatagctgtgtcaccttcatcttaaaaattatgtcgaagcatgctctggaattc 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccagtttatagctgtgtcaccttcatcttaaaaattatgtcgaagcatgctctggaattc 620

                                                                 
Query: 420 ttaagtaaataacatggtgaaagaattgagcctgcataggtgggaacaatagca 473
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttaagtaaataacatggtgaaagaattgagcctgcataggtgggaacaatagca 674


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 874
Length adjustment: 10
Effective length of query: 463
Effective length of database: 864
Effective search space:   400032
Effective search space used:   400032
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)