BAC Information

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BAC

Clone NameMSMg01-439F03
Chromosome2 (Build37)
Map Location 118,600,943 - 118,725,477
singlet/doubletdoublet
Overlap geneDisp2, D2Ertd750e, Ivd
Upstream geneThbs1, Fsip1, Gpr176, 1700054M17Rik, Eif2ak4, Srp14, LOC668859, Bmf, LOC640461, Bub1b, Pak6, Gm1337, Plcb2, LOC100043272, A430105I19Rik
Downstream geneBahd1, Chst14, LOC677379, Ccdc32, Rpusd2, Casc5, Rad51, 1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19, Ppp1r14d, Spint1, Rhov, Vps18, LOC100043609, Dll4, Chac1, Inoc1, LOC100043612, Exdl1, 1500003O03Rik, LOC100043307, Oip5, Nusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439F03.T7 (MSMg01no439_f03.b1)MSMg01-439F03.TJ (MSMg01no439_f03.g1)
ACCAG529703AG529704
length736735
length of high quality
(start - end)		576 (47 - 622)413 (76 - 488)
definitionCHROMAT_FILE: MSMg01no439_f03.b1 PHD_FILE: MSMg01no439_f03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:24 2005CHROMAT_FILE: MSMg01no439_f03.g1 PHD_FILE: MSMg01no439_f03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,600,943 - 118,601,514)(118,725,065 - 118,725,477)
sequence
NCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTGCTGGACAGTAAGGCAGAGTGAAGTGAGAGAGATCTCCAAGC
AGCAGACAGCAAGGGCAGAGACCCAGAGCCGAGACCAGAAGGTTGTAACC
AGGATATAAGGAGAAGCCAGCACAGAGCTCTGAGGGGCTATAAGCAGATG
TTCAGGAATGAATGGGGGAGGCTGGCTGGGGCCCAGACAGAGACAGAAGA
AGAGGAAGAATTGGGGTTTACCACAATAGCATGTCTCCCAAGTGCCCTGA
AATTTGACCAAGGTTAGGAGGGCAGACCACTGGCAGTGTGGACAAAACCT
TAACCTCCTACCTGGCCCTGTGCCACCCAGGGGACTCAGCCAGCTCTTGA
GCCCACAGGGATGCACAAGTAAGCTTTGTATTGACTTTCAATATGAATCT
GCTGTTAGTGGATGAATGAAGGAATAACTGTCAGGCAAGTGGCCAAGTCT
GAGGAGCTGTGGTGGGGGCAGGAGTGAACACAGGAACTAGCATCGGAGAA
GAGGCAGGGGCAAGTTGTCCCCTTCAAAACCAAAGGACTGAAACCACTCT
CTTTTCCCCCTTTCTCTCTAACAGGTGGCAAGGTAAGCACATTCTCGAGG
CTTCCTCCCTCCCCTTCTTTGTGGCCCCCCCCCCCCGGCTGGTTCTTTCA
GAACTCTCACCTCCCTTTTGGGACCAGACCTTGCCG

GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTTACCTCCAGAACTGCCCCCGGG
GTCTCCCAAGCTGCCTACCTAGTCTACAGGACACGGTTTACCAAGGCCGT
ACTAAAATCGTGGTGCGCCAACTTCTCAAAGGGCCAAAGTCTCTTAGTAC
CTCTGTCCTCCTACTTCCCATCCTTAGGGAAGGCAAAATCCCAAACCTCG
GAAAGTAGGGCACTGAAGGACTTCTCCCTTCACTGAGCCTCCCAAGGCAA
AGGTGCTCTGCAGTGCTCCCCAACACTTACAGGCCAACTGTACTTTCCAT
CTCACAAAATTAGCCCCTCTCCTCAGCCAAGTCCATTATCGTGTCTCATG
GTAGACCCCGGTCCTCAGATTGGAAGTAGAGGGTATTTCTGGCCACTTAA
GTGAGCAAGGTAGGACAGCAGACTCTGATGATAGGGGTGGGGTGGCTCGA
TATCCTCCTTCCTCCTTCCCCCCCTCCCCGCTTTTCCTTTTTTCCTTTTT
TTTCCCTTCCCTTTTTTTACTTCGTTTTTTTTATTTTTTCCTATTTTACT
CCTTTCTTTCTACTTCTCTCTCCTTTTTTTTTTCTTTCCTTTTTTTTTTT
TTCCTTTTCCCTTTTTCCCCCCTCTTTTTCTTGCCTTTTCTTCCCCTCCA
TGTTTGTTCCTCCATTTTTTTTTCCCACTCCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_f03.b1 MSMg01no439_f03.b1 CHROMAT_FILE:
MSMg01no439_f03.b1 PHD_FILE: MSMg01no439_f03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:24 2005
         (576 letters)



>mm_chr2_118600739_118601714
          Length = 976

 Score = 1106 bits (572), Expect = 0.0
 Identities = 572/572 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctgctggacagtaaggcagagtgaagtgagagagatctccaagcagcagacagc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctgctggacagtaaggcagagtgaagtgagagagatctccaagcagcagacagc 264

                                                                       
Query: 65  aagggcagagacccagagccgagaccagaaggttgtaaccaggatataaggagaagccag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagggcagagacccagagccgagaccagaaggttgtaaccaggatataaggagaagccag 324

                                                                       
Query: 125 cacagagctctgaggggctataagcagatgttcaggaatgaatgggggaggctggctggg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cacagagctctgaggggctataagcagatgttcaggaatgaatgggggaggctggctggg 384

                                                                       
Query: 185 gcccagacagagacagaagaagaggaagaattggggtttaccacaatagcatgtctccca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcccagacagagacagaagaagaggaagaattggggtttaccacaatagcatgtctccca 444

                                                                       
Query: 245 agtgccctgaaatttgaccaaggttaggagggcagaccactggcagtgtggacaaaacct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agtgccctgaaatttgaccaaggttaggagggcagaccactggcagtgtggacaaaacct 504

                                                                       
Query: 305 taacctcctacctggccctgtgccacccaggggactcagccagctcttgagcccacaggg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 taacctcctacctggccctgtgccacccaggggactcagccagctcttgagcccacaggg 564

                                                                       
Query: 365 atgcacaagtaagctttgtattgactttcaatatgaatctgctgttagtggatgaatgaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atgcacaagtaagctttgtattgactttcaatatgaatctgctgttagtggatgaatgaa 624

                                                                       
Query: 425 ggaataactgtcaggcaagtggccaagtctgaggagctgtggtgggggcaggagtgaaca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggaataactgtcaggcaagtggccaagtctgaggagctgtggtgggggcaggagtgaaca 684

                                                                       
Query: 485 caggaactagcatcggagaagaggcaggggcaagttgtccccttcaaaaccaaaggactg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 caggaactagcatcggagaagaggcaggggcaagttgtccccttcaaaaccaaaggactg 744

                                           
Query: 545 aaaccactctcttttccccctttctctctaac 576
           ||||||||||||||||||||||||||||||||
Sbjct: 745 aaaccactctcttttccccctttctctctaac 776


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space:   546756
Effective search space used:   546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no439_f03.g1 MSMg01no439_f03.g1 CHROMAT_FILE:
MSMg01no439_f03.g1 PHD_FILE: MSMg01no439_f03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:25 2005
         (413 letters)



>mm_chr2_118724865_118725677
          Length = 813

 Score =  799 bits (413), Expect = 0.0
 Identities = 413/413 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttacctccagaactgcccccggggtctcccaagctgcctacctagtctacaggacacg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 atttacctccagaactgcccccggggtctcccaagctgcctacctagtctacaggacacg 554

                                                                       
Query: 61  gtttaccaaggccgtactaaaatcgtggtgcgccaacttctcaaagggccaaagtctctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 gtttaccaaggccgtactaaaatcgtggtgcgccaacttctcaaagggccaaagtctctt 494

                                                                       
Query: 121 agtacctctgtcctcctacttcccatccttagggaaggcaaaatcccaaacctcggaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 agtacctctgtcctcctacttcccatccttagggaaggcaaaatcccaaacctcggaaag 434

                                                                       
Query: 181 tagggcactgaaggacttctcccttcactgagcctcccaaggcaaaggtgctctgcagtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tagggcactgaaggacttctcccttcactgagcctcccaaggcaaaggtgctctgcagtg 374

                                                                       
Query: 241 ctccccaacacttacaggccaactgtactttccatctcacaaaattagcccctctcctca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ctccccaacacttacaggccaactgtactttccatctcacaaaattagcccctctcctca 314

                                                                       
Query: 301 gccaagtccattatcgtgtctcatggtagaccccggtcctcagattggaagtagagggta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gccaagtccattatcgtgtctcatggtagaccccggtcctcagattggaagtagagggta 254

                                                                
Query: 361 tttctggccacttaagtgagcaaggtaggacagcagactctgatgataggggt 413
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tttctggccacttaagtgagcaaggtaggacagcagactctgatgataggggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 813
Length adjustment: 9
Effective length of query: 404
Effective length of database: 804
Effective search space:   324816
Effective search space used:   324816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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