Query= MSMg01no440_a14.b1 MSMg01no440_a14.b1 CHROMAT_FILE:
MSMg01no440_a14.b1 PHD_FILE: MSMg01no440_a14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:19 2005
(583 letters)
>mm_chr2_81674803_81675785
Length = 983
Score = 1081 bits (559), Expect = 0.0
Identities = 574/579 (99%)
Strand = Plus / Plus
Query: 5 gaattcaatgtagtctgcgtactgccttaggaagggagaatcacagaagagctgagtggg 64
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaatgtagactgtgtactgccttaggaagggagaatcacagaagagctgagtggg 264
Query: 65 gtagggaggaagaattgaaaatgagtgaattgctatgagttgtttcaaagagagagaatg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtagggaggaagaattgaaaatgagtgaattgctatgagttgtttcaaagagagagaatg 324
Query: 125 agcctttcaagttcctggaagaagatgacaaactgcagaatactaacagcatgttacatc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agcctttcaagttcctggaagaagatgacaaactgcagaatactaacagcatgttacatc 384
Query: 185 cattccttttttctgcccaggctatagagggcttttaatctggtaacatggctgttcttg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cattccttttttctgcccaggctatagagggcttttaatctggtaacatggctgttcttg 444
Query: 245 caagggattacatccaaagactttctaggtctataccatctggccagaatgtggacacag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caagggattacatccaaagactttctaggtctataccatctggccagaatgtggacacag 504
Query: 305 cctggattacaatatgatctggctggaattcagacatgcccttagtacacaattggaatc 364
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 505 cctggattacaatatgatctggctggaattcagacatgcccttagtacacaaatggaatc 564
Query: 365 gctaacaatgagggaaagattagtttgtagaaggaaacagctacgtttgaaagtggtctc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gctaacaatgagggaaagattagtttgtagaaggaaacagctacgtttgaaagtggtctc 624
Query: 425 taattaaggagcagacaaaatgagttttcagaaaaagatttggcagagtgatttagagat 484
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 625 taattaaggagcagacaaaatgagttttcagaaaaagatgtggcagagtgatttagagat 684
Query: 485 atggtgtgtccatctctcatgaatacagagtagcagagaaaaagaggtttttattaaagg 544
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 685 atggtgtgtccatctctcatgaatacagagtagcagagaaaaagaggtttttattacagg 744
Query: 545 gacaggtttacagacaggttgcagatataacaagctaaa 583
|||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gacaggtttacagacaggttgcagatataacaagctaaa 783
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space: 557529
Effective search space used: 557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no440_a14.g1 MSMg01no440_a14.g1 CHROMAT_FILE:
MSMg01no440_a14.g1 PHD_FILE: MSMg01no440_a14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:19 2005
(536 letters)
>mm_chr2_81841758_81842689
Length = 932
Score = 920 bits (476), Expect = 0.0
Identities = 520/536 (97%), Gaps = 4/536 (0%)
Strand = Plus / Minus
Query: 1 cttcctctctgcctttcagtttgaaaattgactccagcagagagctatgagaatcacaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 899 cttcctctctgcctttcagtttgaaaattgactccagcagagagctatgagaatcacaat 840
Query: 61 tctcatttcatttatttcccccttttcagggattacaattctgttctccctattgggcaa 120
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 actcattacatttatttcccccttttcagggattacaattctgttctccctattgggcaa 780
Query: 121 ttttacaaaaaccgttgcttcatgtatgttgcactagtttgcagttggtaaaatgagaat 180
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 ttttacaagaacagttgcttcatgtatgttgcactagtttgcagttggtaaaatgagaat 720
Query: 181 ggcaagctccttttcaaatcaggagcactagatcaaaagggtgtgtccactaggaatcct 240
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 719 ggcaagctccttttcaaatcaggagcactagatcaaaagggtgtgtccagtaggaatcct 660
Query: 241 tcctcctgatattgctttgtttctcatgttgacactagaaaaggttttctaaaccaactg 300
||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 659 tcctcctgagaaggctttgtttctcatgttgacactagaaaaggttttcaaaaccaactg 600
Query: 301 ttttcagtcaagagttaggcattatattcagattgtcttccataactaatgtgtgctaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 ttttcagtcaagagttaggcattatattcagattgtcttccataactaatgtgtgctaaa 540
Query: 361 tcaattttttttagcaagtctatctcttttaaacaaaacccaatatctacaggtatcaga 420
|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 539 tcaa-tttttttagcaagtctatctctttt---gaaaacccaatatctacaggtatcaga 484
Query: 421 tagtgtcatctttttcacatacccagaaacataaacaaactgtgctttcatatgcaataa 480
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 483 tagtgtcatctttttcacatacccataaacataaacaaactgtgctttcatatgcaataa 424
Query: 481 aatgttatttcatagctgcaatatttactgctccattaaaattattattatgacaa 536
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 aatgttatttcatagttgcaatatttactgctccattaaaattattattatgacaa 368
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 932
Length adjustment: 10
Effective length of query: 526
Effective length of database: 922
Effective search space: 484972
Effective search space used: 484972
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
