Query= MSMg01no440_e14.b1 MSMg01no440_e14.b1 CHROMAT_FILE:
MSMg01no440_e14.b1 PHD_FILE: MSMg01no440_e14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:41 2005
(582 letters)
>mm_chr2_44061710_44062694
Length = 985
Score = 1042 bits (539), Expect = 0.0
Identities = 570/581 (98%), Gaps = 3/581 (0%)
Strand = Plus / Plus
Query: 5 gaattccatgcattgacaaaaaagaa-caggggagagtatggagcccatgttcccgtggt 63
|||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatgcacagagaaaaaagaaccaggggagagtatggagcccatgttcccgtggt 264
Query: 64 gcaggtatgctggggagagac--agtccaggtcttcctaagttgctcttctgcagtgcat 121
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcaggtatgctggggagagacagagtccaggtcttcctaagttgctcttctgcagtgcat 324
Query: 122 tacccttaatcctctgagcaagcacagaatgaagcagtatgccaagaaccagacacttaa 181
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 325 tacccttaatcctctgagcaagcacagaatgaagcagtatgccaagaaccagactcttaa 384
Query: 182 ctcttcgaacacaaaagggccatggacagataacttacttctcacacataagctgtggaa 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctcttcgaacacaaaagggccatggacagataacttacttctcacacataagctgtggaa 444
Query: 242 tggttaataaatacgtgtgagtattgtttctcattgtatccaatgtgaaccagaagaatt 301
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 445 tggttaataaatacgtgtgagtattgtttctcattgtagccaatgtgaacaagaagaatt 504
Query: 302 gagccacagccagcatttatttaagcatcatttttgccatctggattctttgtggggaaa 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gagccacagccagcatttatttaagcatcatttttgccatctggattctttgtggggaaa 564
Query: 362 gaagcatttgaagggaattgcctttggtcacaaggatgatttgactctcctccctattta 421
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 565 gaagcatttgaatggaattgcctttggtcacaaggatgatttgactctcctccctattaa 624
Query: 422 tatgttaatcatcccataggaacctatgctcaaagttccataaaggaggccccctttccc 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tatgttaatcatcccataggaacctatgctcaaagttccataaaggaggccccctttccc 684
Query: 482 ctcactgctgcttgacagtttagatagcatggtgatctctaagaggtgtggaaggataac 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctcactgctgcttgacagtttagatagcatggtgatctctaagaggtgtggaaggataac 744
Query: 542 aaacatttctacgtacaaattacattgacctatatgaaaga 582
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aaacatttctacgtacaaattacattgacctatatgaaaga 785
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 985
Length adjustment: 10
Effective length of query: 572
Effective length of database: 975
Effective search space: 557700
Effective search space used: 557700
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no440_e14.g1 MSMg01no440_e14.g1 CHROMAT_FILE:
MSMg01no440_e14.g1 PHD_FILE: MSMg01no440_e14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:41 2005
(507 letters)
>mm_chr2_44226561_44227467
Length = 907
Score = 942 bits (487), Expect = 0.0
Identities = 502/507 (99%)
Strand = Plus / Minus
Query: 1 attctttttaatagctgagtagtactccattgtgtaaatgtatgacattttctgtatcca 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 824 attctttttaatagctgagtagtactccattgtgtaaatgtacgacattttctgtatcca 765
Query: 61 ttcctctgttgagagacatctgggttctttccagcttctggctattataaataaggcaac 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 ttcctccgttgagagacatctgggttctttccagcttctggctattataaataaggcaac 705
Query: 121 aagcactcttaaccaccaagccatctatctctttggcctcaaggactagaatatcttttg 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 aagcactcttaaccaccaaaccatctatctctttggcctcaaggactagaatatcttttg 645
Query: 181 accttgataagaggttgaaattatgctgggtgggactttatagtctgaaagtcagcccac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 accttgataagaggttgaaattatgctgggtgggactttatagtctgaaagtcagcccac 585
Query: 241 cttccttgtgtgattaatcctgttgccatatccttccctcctcagtgaatagatgacaat 300
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 cttccttgtgtgattaattctgttgccatatccttccctcctcagtgaatagatgacaat 525
Query: 301 taaaccttgcatgttgcattctcttttacttattctccatagggagcatagcccatgatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 taaaccttgcatgttgcattctcttttacttattctccatagggagcatagcccatgatt 465
Query: 361 gctagctccaagagtagtgtaagaaggctaacaataaaattaagattggggattgctcat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 gctagctccaagagtagtgtaagaaggctaacaataaaattaagattggggattgctcat 405
Query: 421 atgctgttttgtaacaatgagacaggcagtgatgacaggtacagaacctattcatgagca 480
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 atgctgttttgtaacaatgggacaggcagtgatgacaggtacagaacctattcatgagca 345
Query: 481 ggatgatagcctgattgctaaaactct 507
|||||||||||||||||||||||||||
Sbjct: 344 ggatgatagcctgattgctaaaactct 318
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space: 445809
Effective search space used: 445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
