BAC Information

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BAC

Clone NameMSMg01-440H20
Chromosome2 (Build37)
Map Location 116,922,858 - 116,923,260
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC433464, Tmco5, LOC100043557, LOC241621
Downstream geneSpred1, LOC624574, 2610510H03Rik, Rasgrp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-440H20.T7 (MSMg01no440_h20.b1)MSMg01-440H20.TJ (MSMg01no440_h20.g1)
ACCAG530594AG530595
length851774
length of high quality
(start - end)		49 (73 - 121)401 (81 - 481)
definitionCHROMAT_FILE: MSMg01no440_h20.b1 PHD_FILE: MSMg01no440_h20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:57 2005CHROMAT_FILE: MSMg01no440_h20.g1 PHD_FILE: MSMg01no440_h20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATNCCAGAGAATGACAAGGTGGAAGGTGGGGAAGACAGAGAAAGG
GAAGGAGGAGTTGGGGGGGCTTTTTTCCCCTTCTTTTTTCNTCCCNNCCT
TTCTTTGCCCTTCCTTCTTTTTGGTGGGGGGGATCCCTCTCTCGCCCGGC
GCGCTCTGTCGGCGCCCTTTCCGCCCCCGGGCCCGTCCCCTGGTCTCCGC
CCCGCTTTTTTTTCGCCCCCGGCTGGCGGGTCGTCGCGTCTCCGCGCTCT
CCCGCCCGCTCCCCGCCAGCGCTTCCCTCCCTTTGCCCGCCGCCGGCCGC
CGAGGCGCCGTCTTTCTTTTTTTTTCTCTCTCTCTCCCCCGCGCGCGCGC
GGCGCCCGAGCCACACAAGCGACCCCCCCCCCCTCCCTCAAACTGTGTCT
TACTGCTTCTGCCGCCTTTTCCTTCGTGTTCTCCACCGCTTTTTCTGTTT
CTCCCTTGATCCTTCAACTCTACCTCCTCTCTAATCTCTCACCCTCTATT
GCTCTCTTTCCTGTCTTCTCTTTTCTCCTCCCTGCTCCTCTTCTTCGCAC
ATCCCTCTCTTACTTTCCTTTCTCTTTTCTTCTCTATCTTTCTCTATCTA
CAATATCCTCTCCTTACTCTTTTATTCTCCTCCTTTCTCCCCATCTGTCT
CCCTCATATCTATCTTACTTTCCTCTCCTCTATTTCCATCTCTCCCTCTT
TTCCCTCCTTTCTTCTTATCCCCCAACTCTTTTGTCCCTTCTTTTAATTC
TCCTCTTTCCTCTTACCCTATCCCCCCCCTCTCACTCACTTATCTTTACT
G

NNNNCCCGATGCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTCGTTTGGCCAATCGGGC
TGGGCAGCAAACCCCAAACATGCTCTTATCTTCAACTCTGCAGTGCCCAG
GATTAGAGGCCAGCTCCTTCACTAGGGTACTAGAGATCAAACGCAGGTCC
TCATCGCTACATGGGAAGCATTTTGCTTACTGAGCCATTTCCCAAGCCTC
TGTCCCTTTGTTTCTTCATAGAACAGCTTTTGAAAAAAAAAAATCTCAGC
TTTAACTCAGACCAAGAGGAAGAGAGCAAAAAAATCTATAGTGTGCAGGA
TGTTGTGGCGAACACCCCAGCTACAAAACAGAAAGAGAGATAGTGGCAGA
GCAGGGAGAAGAATGTTCTAGACGAAGGAAGTGTGGTGATGACTACAAAG
CACAGACTCTTACTGGGAGCATACTCACTGGGATTTGCCAAGTTGGACTT
TGCTTGTGTGGNCATTGCTGTCCTCACCAAAGCGGGGCTCTTGGCCCAGC
CTGGTCTTTTCTCCATTAGGACTCCTACAGAAAGGGCAGGGTCTGAAATC
CCCTTGATAACCCTTCCGGTGATCCGGCCCCGGATAAATAAACCCCGGAG
CCAAAAGTTTTGGGTGGAATTCATTCCCCTGTTCCTTAAAAAGGACCTTG
GAACATCCCTTTTTCTTCTAAGGGCCCCCTTTTGAAAAAAAAGGGACCCC
CCAGTTTTTTGGTTAACCTTGGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no440_h20.g1 MSMg01no440_h20.g1 CHROMAT_FILE:
MSMg01no440_h20.g1 PHD_FILE: MSMg01no440_h20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:57 2005
         (401 letters)



>mm_chr2_116922488_116923290
          Length = 803

 Score =  764 bits (395), Expect = 0.0
 Identities = 401/403 (99%), Gaps = 2/403 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actcgtttggccaatcgggctgggcagcaaaccccaaacatgctcttatcttcaactctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 actcgtttggccaatcgggctgggcagcaaaccccaaacatgctcttatcttcaactctg 714

                                                                       
Query: 61  cagtgcccaggattagaggccagctccttcactagggtactagagatcaaacgcaggtcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 cagtgcccaggattagaggccagctccttcactagggtactagagatcaaacgcaggtcc 654

                                                                       
Query: 121 tcatcgctacatgggaagcattttgcttactgagccatttcccaagcctctgtccctttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 tcatcgctacatgggaagcattttgcttactgagccatttcccaagcctctgtccctttg 594

                                                                       
Query: 181 tttcttcatagaacagcttttg-aaaaaaaaaaatctcagctttaactcagaccaagagg 239
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 593 tttcttcatagaacagcttttgaaaaaaaaaaaatctcagctttaactcagaccaagagg 534

                                                                       
Query: 240 aagagagc-aaaaaaatctatagtgtgcaggatgttgtggcgaacaccccagctacaaaa 298
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 aagagagcaaaaaaaatctatagtgtgcaggatgttgtggcgaacaccccagctacaaaa 474

                                                                       
Query: 299 cagaaagagagatagtggcagagcagggagaagaatgttctagacgaaggaagtgtggtg 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 cagaaagagagatagtggcagagcagggagaagaatgttctagacgaaggaagtgtggtg 414

                                                      
Query: 359 atgactacaaagcacagactcttactgggagcatactcactgg 401
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 atgactacaaagcacagactcttactgggagcatactcactgg 371


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 803
Length adjustment: 9
Effective length of query: 392
Effective length of database: 794
Effective search space:   311248
Effective search space used:   311248
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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