Query= MSMg01no440_l01.b1 MSMg01no440_l01.b1 CHROMAT_FILE:
MSMg01no440_l01.b1 PHD_FILE: MSMg01no440_l01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:14 2005
(386 letters)
>mm_chr2_141945439_141946224
Length = 786
Score = 576 bits (298), Expect = e-169
Identities = 350/388 (90%), Gaps = 34/388 (8%)
Strand = Plus / Minus
Query: 7 gaattccacaggcttctgacctccacatacacactgtggcatgctgagctctctctctct 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gaattccacaggcttctgacctccacatacacactgtggcatgctgagctctctctctct 563
Query: 67 ctctctctctctctttctctctctctttctctttctcttgaaaaacttgagttaaggatt 126
||||||| |||||||||||||||||||||||||||
Sbjct: 562 ctctctc--------------------------tctcttgaaaaacttgagttaaggatt 529
Query: 127 gtcttattaatattagtgagaagccacatggaagaaaaacaaaacaaatttaatagaaaa 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 gtcttattaatattagtgagaagccacatggaagaaaaacaaaacaaatttaatagaaaa 469
Query: 187 atccaggcttgaatagttgttatcaaataaaactaggtaaagagatgaaacgtagtcact 246
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 468 agccaggcttgaatagttgttatcaaataaaactaggtaaagagatgaaatgtagtcact 409
Query: 247 tagtagttttcttcaaggtaaagtgactgtgaagtggctcagatatgcctacagaagtga 306
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 408 tagtagttttcttcaaggtaaagtgactgtgaagtggctcagagatgcctacagaagtga 349
Query: 307 ccctacttgtttcccattgttcttaaggtttaagaaagatttcc----agggagggaggg 362
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 348 ccctacttgtttcccattgttcttaaggtttaagaaagatttccagggagggagggaggg 289
Query: 363 ag----ggagggagagagagagagagag 386
|| |||||||| |||||||||||||
Sbjct: 288 agtaagggagggagggagagagagagag 261
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 786
Length adjustment: 9
Effective length of query: 377
Effective length of database: 777
Effective search space: 292929
Effective search space used: 292929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no440_l01.g1 MSMg01no440_l01.g1 CHROMAT_FILE:
MSMg01no440_l01.g1 PHD_FILE: MSMg01no440_l01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:14 2005
(612 letters)
>mm_chr2_141802136_141803146
Length = 1011
Score = 1145 bits (592), Expect = 0.0
Identities = 607/612 (99%), Gaps = 1/612 (0%)
Strand = Plus / Plus
Query: 1 ctcccaattagccgtctgctctggctataacttaagctgtcagttgaagagatgagaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcccaattagccgtctgctctggctataacttaagctgtcagttgaagagatgagaaat 260
Query: 61 ggtgtactggtaagtttaaacttataaaaatttacaatctgcaaaggaaatgtgaaaaag 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtgtactggtaagtttaaacttataaaaatttacaatctgcaaaggaaatgtgaaaaag 320
Query: 121 agcagtaacagctagaaaattcaagtgcagaaatgtaccaaatcagttccactaatattc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcagtaacagctagaaaattcaagtgcagaaatgtaccaaatcagttccactaatattc 380
Query: 181 ctatttatttttaaaacatgtccatttttgctacaatattgcacctttagaaatgaaatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctatttatttttaaaacatgtccatttttgctacaatattgcacctttagaaatgaaatc 440
Query: 241 gattagtggacacactaggtgcctttaagatcggaaaattgaccactgttggttgattgc 300
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 gattagtggacactctaggtgcctttaaaatcggaaaattgaccactgttggttgattgc 500
Query: 301 tcttcacaatcattgagaaaaatgcttattatatgtatatacatctcaggggacaaaaaa 360
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcttcataatcattgagaaaaatgcttattatatgtatatacatctcaggggacaaaaaa 560
Query: 361 aaatctgattttttttttattttttagatgacaaagtagacttttctactcttttcccac 420
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaatctgattttttttt-attttttagatgacaaagtagacttttctactcttttcccac 619
Query: 421 ccccgccctccaatttaaatgatttttctctttactacttttgagcaaactcaaaataca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ccccgccctccaatttaaatgatttttctctttactacttttgagcaaactcaaaataca 679
Query: 481 ttttcaaactagtgaagtggtagtttaatttgatgtctaaagcaacaagtttccattaca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ttttcaaactagtgaagtggtagtttaatttgatgtctaaagcaacaagtttccattaca 739
Query: 541 tccatttaatggggtacaggaagacatagctatatatttcttctgacctttgatagctca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tccatttaatggggtacaggaagacatagctatatatttcttctgacctttgatagctca 799
Query: 601 tcacaaacatca 612
||||||||||||
Sbjct: 800 tcacaaacatca 811
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1011
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1001
Effective search space: 602602
Effective search space used: 602602
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
