NNTTTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCC
GCGGAATTCTCACCTGAGGCATACCGAATGGCAGAGAAGCGCCTGAAAAA
ATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGA
GATTCCACCTCACACCAGTCAGAATGTCTAAGATCAAAAATTCAGGTGAC
AGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTG
GTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCCGTCTGGCCGTTCC
TCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTG
GGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCAC
TATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCA
GATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACA
ATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGC
CAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACTTTCAC
AAAGGAACTCTCACAATATGTACTCCCTGATAAATGGATATTAGCCCCAA
ACCTAGGATACCCCCGATATTAGATACCATTTTCCCTAAACCCTGGAACT
CTGAAAAAATGGAAAACTGAAGGGGGGGGTCTTTGGCCCCCCCTTAAAAT
GGGAAAAAAAAACCCCTG

NNNTTCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTTAAAAAAACAACAAAA
AAAAACCAAAACACTAGTTTGTTATTTCCTGGCATTTGGAGATTTTCTGT
AACCTTTATATGTGCTATCAGTCAACTTTAGTGTTCTTTTCATACGATGA
CTAATATAAACAACTTAAAGTAATTAGTTCTTACTTGTGCTCTTAGTTTC
AAGGTTTTACTTTATTGGGGCTGGCTACATTGATTCCAGACTGGTACTGG
CAATAATCACCTCGTGGCAGAAAGAAACAACAATGGAATGGCAGCAGGGC
CAAAACAGCTCCAAACGACATGGCACCCGTGAACAACCTGCTTGAGCCAG
GGGAATGATTCACTATCTCTTTCTGAGCTATTCAGATTGTGATTCATTAT
GTGAGAGTTCTCAAGATCCAATTCTCTCCGGAAAAGCCAGGACAGAAATG
CCCAAGACCTGTGCTAAACTAATCTTCTAGGTATTTAAGTCATTCAGTTT
GCTAAGAACACTANGTCAAAGAGTTCAGAATTGGCATTATTATTTTTTTT
ATGTATGAACAGACACCCCGACTTGGTACAGACATGCCCTTTCCCCAACT
ATTCCCCGACTTACTCCAATCCCTATACCCCTACCAAAACCCTACCTGAA
TGACCCCCCATTGGTAAAAAACAACCTCCCCCTTTCCGATTGAGGTGGTC
CCCCGGGGTGAAA

Query= MSMg01no440_n12.g1 MSMg01no440_n12.g1 CHROMAT_FILE:
MSMg01no440_n12.g1 PHD_FILE: MSMg01no440_n12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:26 2005
         (474 letters)



>mm_chr2_41098545_41099418
          Length = 874

 Score =  820 bits (424), Expect = 0.0
 Identities = 447/456 (98%), Gaps = 4/456 (0%)
 Strand = Plus / Minus

                                                                       
Query: 21  aaaaaccaaaa--cactagtttgttatttcctggcatttggagattttctgtaaccttta 78
           |||||  ||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aaaaa--aaaattcactagtttgttatttcctggcatttggagattttctgtaaccttta 628

                                                                       
Query: 79  tatgtgctatcagtcaactttagtgttcttttcatacgatgactaatataaacaacttaa 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 tatgtgctatcagtcaactttagtgttcttttcatacgatgactaatataaacaacttaa 568

                                                                       
Query: 139 agtaattagttcttacttgtgctcttagtttcaaggttttactttattggggctggctac 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 567 agtaattagttcttacttgtgctcttagtttcaaggttttactttattggggccggctac 508

                                                                       
Query: 199 attgattccagactggtactggcaataatcacctcgtggcagaaagaaacaacaatggaa 258
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 507 attgattctagactggtactggcaataatcacctcgtggcagaaagaaacaacaacggaa 448

                                                                       
Query: 259 tggcagcagggccaaaacagctccaaacgacatggcacccgtgaacaacctgcttgagcc 318
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 447 tggcagcagggccaaaacagctccaaacaacatggcacccgtgaacaacctgcttgagcc 388

                                                                       
Query: 319 aggggaatgattcactatctctttctgagctattcagattgtgattcattatgtgagagt 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aggggaatgattcactatctctttctgagctattcagattgtgattcattatgtgagagt 328

                                                                       
Query: 379 tctcaagatccaattctctccggaaaagccaggacagaaatgcccaagacctgtgctaaa 438
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 327 tctcaagatccaattctctccggaaaagccaggacagaaatgcccaaaacctgtgctaaa 268

                                               
Query: 439 ctaatcttctaggtatttaagtcattcagtttgcta 474
           ||||||||||||||||||||||||||||||||||||
Sbjct: 267 ctaatcttctaggtatttaagtcattcagtttgcta 232


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)