BAC Information

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BAC

Clone NameMSMg01-441C12
Chromosome2 (Build37)
Map Location 78,262,526 - 78,263,029
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp533, BC003993, LOC667920, OTTMUSG00000016703
Downstream geneLOC383717, LOC100040476, LOC100040494, 4930401B11Rik, Ube2e3, LOC100040526, Itga4, Cerkl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-441C12.T7 (MSMg01no441_c12.b1)MSMg01-441C12.TJ (MSMg01no441_c12.g1)
ACCAG531104AG531105
length1,116742
length of high quality
(start - end)
---498 (79 - 576)
definitionCHROMAT_FILE: MSMg01no441_c12.b1 PHD_FILE: MSMg01no441_c12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:50 2005CHROMAT_FILE: MSMg01no441_c12.g1 PHD_FILE: MSMg01no441_c12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGTTCTTTAATTCTTTGCGCCTTGNTAAGAAGGAANAATACTACAAAAAA
AAGGGGAGGGGGGGGGAAANNNNGTTTTTTCCCCCAAAAAGAAAAAGCNG
NAGAAAAAGGAAACTGGCCGGCAAATGATTAATATCCACCCCATTCTTTT
ATATTGCACCCCTCCCTATAAAATATCCAAATGGGATCATTTCATAATAC
TTTTAATCTTGGCACCCGCCTGCCCCCTATCTTTTCTTTCCCCCTCGCTT
ATATTGTACGTAACGGAGCTTTAGTGGCTCGCTCCGGGTATTTCTCGTGT
ATTGGCTGGTTTATTCCTTGGAAAACCCCGGGAGCCTTAGTATTTTATTA
AACAATTGGCTTGGGAGCCGAACCGCAGATACCCTGCCTCCCTATTATGT
GCGGCTGCTCTTTGACGACCAGGAGAAAATGTTGTTTTTTTTTTGAAAAC
CGCAACCGCGCGCCTGGATATTTATTGTTTTCCCAAACCTAATTTATTAT
ATTACTCGCGCCCTCCAACTCTTCCGTCGTATAACTATATAAGAACTCGA
GTTTTTTACCGCACGCTGCATTATTGTTTTTGGGATATGATTAACGCAGG
ATATTTATAGTGTCCGGGGACAAATATGTATTAACAGCGATTTTACTATA
ATCTCGACTCACCCACTCACGACTGCTATTGTGCGCCACCGTCTTAAATA
CACCGTGCGTTTTTGTTATTTAATATGTACGGTATCTCCAACTCTATTCA
CCCGACATATTTCTGATTCTCGCACTCCGCCCGCCTTATTATATAGTTTA
TCTCAATCCACCCTATATATCCCAACTGCCGTTATTTTTCTTGTGACCCG
TCGAGCAGTTACTATGTATAACAGCGCTCATTTGTGCCGTTTAGAGCCGA
ATTGTTATTTTACCTGGGCAATACCAGTGAGGCGGTGAGTGCTGTAGCTA
TCTACATCCCTATTCCTTAGCTGTAATAACTTTCGGCTNCGCACGGTAAT
AACGCGCGGCGCGGGGAATGNTATTAAACATAATTAGATGGTAGTTTACT
GGTTGTGTTGGTCGTGAAAGAGAAAATTGGGGCCGTTGTATGTTAGAACT
GGTTGCTATATGCTGG
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAATAACTTTCCTAGGAGAAAA
AATGATTATTGATACTGTACAGTGGAGAAAATATGGCCTTTCAATAGGGA
GAAAACTTTTTTGAACCCCTCCTTATTTGTTACTAAATTCAAGATGTACT
ACTTAAACTTTTTGACGTTCACACATAAAATAAAAATAAAAGTATAAGTG
AAAGCTGATGTGATATAAAGATGCAGGAATATGTTTAATATATTATTAAC
TATTTTATAAATGTTATTTTTCTTGAAAGAGGACCTCTCTTGAGTTTACT
TTGCTAGGAAGGTGGACTGATTGTTTTACCTTGAGAATGCTGTGAGATCA
AATGAATGTGTGTTTAGCACAGAACCTAAAAGGGGGCGTAACCTGCGTTT
TGTTGTTAATTCCTCAACAAGGATTGCTTCTACAGTTCTGCTCTTCCTTC
TTTTACTCTCCTCCCCCTTAAAACAGTCTGTTTTTCTCAGACCTAACACG
AGAGTTCAGAAAGCTGCCCCTGATGCTAACCTTGTGTCACCATTTGTCAC
CTGCAGAGTTCTGTGTCTTGGTAAAGGTTAATCTAGTTCTGTGAAGCCTT
CCCCCCCACCTCCCACTCACAAAACACTTGCAGTGGTGTAATGTCCGTGC
CCCGTTTGCTTACCTTACTATCCAAAGTAATCTATGCGCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no441_c12.g1 MSMg01no441_c12.g1 CHROMAT_FILE:
MSMg01no441_c12.g1 PHD_FILE: MSMg01no441_c12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:50 2005
         (498 letters)



>mm_chr2_78262327_78263229
          Length = 903

 Score =  756 bits (391), Expect = 0.0
 Identities = 477/507 (94%), Gaps = 12/507 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   caataactttcctaggag-aaaaaatgattattgatactgtacagtggagaaaatatggc 59
           |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 200 caataactttcctaggagaaaaaaataattattgatactgtacagtggagaaaatatggc 259

                                                                       
Query: 60  ctttcaatagggagaaaacttttttgaacccctccttatttgttactaaattcaagatgt 119
           |||| |||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 260 ctttgaatagggagaaaacttttttgaacacctccttatttgctactaaattcaagatgt 319

                                                                       
Query: 120 actacttaaactttttgacgttcacacataaaataaaaataaaagtataagtgaaagct- 178
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || 
Sbjct: 320 gctacttaaactttttgacgttcacacataaaataaaagtaaaagtataagtgaaa-ctt 378

                                                                       
Query: 179 gatgtgatataaagatgcaggaatatgtttaatatattattaact-attttataaatgtt 237
           |||||||||||||||||||||| || ||||||||||||| ||| | ||||||||||||||
Sbjct: 379 gatgtgatataaagatgcaggagtacgtttaatatattactaa-tgattttataaatgtt 437

                                                                       
Query: 238 atttttcttgaaagaggacctctcttgagtttactttgctaggaaggtggactgattgtt 297
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 438 atttttcttgaaagaggacctctcttgagtttactttgctaggaaggtggcctgattgtt 497

                                                                       
Query: 298 ttacctt-gagaatgctgtgagatcaaatgaatgtgtgtttagcacagaacctaaaaggg 356
           ||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 498 ttacctttgagaatgctgtgagatcaaatgaaggtgtgtttagcacagaaccgaaaaggg 557

                                                                       
Query: 357 ggcgtaacctgcgttttgttgttaattcctcaacaaggattgcttct---acagttctgc 413
           ||||| |||||| ||||||||||||||||||||||||||||||||||   ||||||||| 
Sbjct: 558 ggcgttacctgctttttgttgttaattcctcaacaaggattgcttctcctacagttctgt 617

                                                                       
Query: 414 tcttccttcttttactctcctcccccttaaaacagtctgttttt-ctcagacctaacac- 471
           |||||| ||||||| ||||||||| ||||||||||||||||||| |||||||||||| | 
Sbjct: 618 tcttccctcttttattctcctccctcttaaaacagtctgttttttctcagacctaac-ca 676

                                      
Query: 472 gagagttcagaaagctgcccctgatgc 498
           |||||||||||||||||||||||||||
Sbjct: 677 gagagttcagaaagctgcccctgatgc 703


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 903
Length adjustment: 10
Effective length of query: 488
Effective length of database: 893
Effective search space:   435784
Effective search space used:   435784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)