Query= MSMg01no441_i24.b1 MSMg01no441_i24.b1 CHROMAT_FILE:
MSMg01no441_i24.b1 PHD_FILE: MSMg01no441_i24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:23 2005
(554 letters)
>mm_chr2_139676598_139677551
Length = 954
Score = 1004 bits (519), Expect = 0.0
Identities = 543/555 (97%), Gaps = 9/555 (1%)
Strand = Plus / Plus
Query: 5 gaattcatagaaaataacgtt-ggaaaaagctgaccaaagcatgtggttgggatccacga 63
|||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcatagaaaaaaaagtttggaaaaagctgaccaaagcatgtggttgggatccacga 263
Query: 64 ataatctgcaccatttttctcattttaaagctagtattttattatgatatcgaatgtcta 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ataatctgcaccatttttctcattttaaagctagtattttattatgatatcgaatgtcta 323
Query: 124 agttctcatttgtattttgggaagtgttccaatttatttttcatattatttgaaaagtta 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agttctcatttgtattttgggaagtgttccaatttatttttcatattatttgaaaagtta 383
Query: 184 aattaagcatggaggcaacctatgaactaggaaaaaatccttatcaactatgcatctgac 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aattaagcatggaggcaacctatgaactaggaaaaaatccttatcaactatgcatctgac 443
Query: 244 agaggattagcgtctagactgtacaaacagctagaaactaaaaactaaacatcaaactga 303
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 444 agaggattagcgtctagactgtacaaacagctagaaacaaaaaactaaacatcaaactga 503
Query: 304 ccaattttaataagtggggctatggaaccagagggccctcaaacgaaaaaaaaaaagaaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ccaattttaataagtggggctatggaaccagagggccctcaaacgaaaaaaaaaaagaaa 563
Query: 364 tatttgtgaaagatgttttaagtgttcaatattcttagactatatatacatatagtgtat 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tatttgtgaaagatgttttaagtgttcaatattcttagactatatatacatatagtgtat 623
Query: 424 gtgtgtgtgtgtgtgttttaaaatggttacatggtgctgtcctataacaaggatacatag 483
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gtgtgtgtgtgt----tttaaaatggttacatggtgctgtcctataacaaggatacatag 679
Query: 484 ----ccatgggtaaaatcttctcaatttattagccatctggatactatgaattcccaaac 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ttagccatgggtaaaatcttctcaatttattagccatctggatactatgaattcccaaac 739
Query: 540 acccagcgtattgcc 554
|||||||||||||||
Sbjct: 740 acccagcgtattgcc 754
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space: 513536
Effective search space used: 513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no441_i24.g1 MSMg01no441_i24.g1 CHROMAT_FILE:
MSMg01no441_i24.g1 PHD_FILE: MSMg01no441_i24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:23 2005
(510 letters)
>mm_chr2_139874027_139874936
Length = 910
Score = 917 bits (474), Expect = 0.0
Identities = 502/512 (98%), Gaps = 2/512 (0%)
Strand = Plus / Minus
Query: 1 cagggattgggatactttcttctgtttttcctggcacctgcatgaa--tgcacacatggg 58
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 910 cagggattgggatactttcttctgtttttcctggcacctgcatgaatgtgcacacatggg 851
Query: 59 cagacacacagacacgatatcaaaagtaataaaaataattgtttaaaatttatttattaa 118
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850 cagacacacagacacgacatcaaaagtaataaaaataattgtttaaaatttatttattaa 791
Query: 119 ctcacctgatgtgggtcccagaaactgaactgggtatccctggaagagcagcaggtgctc 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 ctcacctgatgtgggtcccagaaactgaactgggtatccctggaagagcagcaggtgctc 731
Query: 179 ttaaccactgagccatttctagttctaagaataattttcttaaggaaactagtttatttg 238
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 ttaaccactgagccatctctagttctaagaataattttcttaaggaaactagtttatttg 671
Query: 239 gagccaatctgttaagtaactttctcggtatttgtttaaaagacaacatcaggattttta 298
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 670 gagccaaactgttaagtaactttctgggtatttgtttaaaagacaacatcaggattttta 611
Query: 299 gagtcatgaattcctgagaactttagattcagtaatttcctgaatggtggggcttttaaa 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 gagtcatgaattcctgagaactttagattcagtaatttcctgaatggtggggcttttaaa 551
Query: 359 agatgagtagtgagggtatgtaaggttctttgttcctggtctcacctgcattatcaactc 418
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 agatgagtagcgagggtctgtaaggttctttgttcctggtctcacctgcattatcaactc 491
Query: 419 cataccagaggagctcctgaacctactggttgttttttgcttttatttgaaaaggtacat 478
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 490 cataccagaggagctcctgaacctactggttgttttttgcttttatttaaaaaggtacat 431
Query: 479 ttatttatttatttggctatatatttcatttg 510
|||||||||||||||| |||||||||||||||
Sbjct: 430 ttatttatttatttggttatatatttcatttg 399
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space: 450000
Effective search space used: 450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
