NNNNNNCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCTGGCTTTCACCTTTAAAACTACTTTCAGGTAGATACC
AACTACAACTGTTTCTTCTGATATACAAGTAGCATACAGATATTCTTCAT
CTTACAACAGTGTTATACTAGTAACCAGAATCTGAGAGAACACCACTGCA
TATCATCAGTACTAAGCAGACTTAGTGAGCTATAATAAAAAATGAACACA
TAAACGTGGGAGAAGAGGAGTGGGAGGAGATATGGCCAAATACACTGAAA
TTGTATATGACATTCCCAAGAATAATGTTAAAGGGAAATTTTTAAGATTT
ATTTCTATGTCTTTAAACATGGTAAAATCGAAAGTTCAGTGTCCACAAAT
AAAGTTCTATTGGAATGCAGCCATGATGATTTCTGAATTTATGGCTGTTT
TCATGTCACAAAAGTAGAGTTTAGATAATTACAATTCAAAGGGTAAGATC
ATCAACAAAGCCTAAAATAGTCTCCATTTAACTCTTAAACAGAACAAAAC
ATACTCTGTGACCTTTAGCTGAAAAGAAATAGTAGGAAATAGTAGGAAAA
TATTCTTTTAGTGCCAAATACAACATCGCATGCGAGACTATGATTTACTA
CTACTCTTATATTGTTAAACTCCAAATCTGGGTTCCATCTTTACTGGAAA
GAGGTGGGTTGAGTTAATTCTAAAATCCCCTCTCC

TCCTCCGATGTANAGATAAACCCGGNNNNNNNNNNNATTCGNAACCCGCC
NNNNNNNNNNNNNNNAAGTGCGATAAGAAGCGGGGNNNNNNNNGGGNNNN
NNNNNNNNNNGGGGGGGNNGNGTTTTTTCCCCCCGGTTTTGTCTGGCCCG
GGGGNTTTTTTTCTNCCCCTCGTTTTTTTCTTGGGGGGGGTTTTTGTTTC
CCTCGCCCTGTGCGCGCCTTTCTCCGCTGCTTCTGTCTCTTCCNNGCCTG
CCCGGCCGCCCCGTTCCCTTTTTTTTTCCCCCGGCCGCCCTCCGTCCCCT
GGTCCCCCCCCTCANTCGCTCCGGCCCCCCCTTGGCCGCTTTTAAATAAA
GTTTCCCGCACCCCGACGCACCACCCCACCCGCCCATTTTTTTTTTCTCC
TCCCCCTCAACCTGCGTCTTAGTGCCCACACCCCTCCTCTAATCCCCTAC
AATCCCCCCCCTCTTCCCCTATACTCCCCCCCACACCCCCCATCTCTATC
CCCCCCCCCCCCCTTCCCTATTTCTTATCCCCCCCCCCCCCATTTTCTTA
TCTAATCTCTCGCCTTTCCACATTCCATTCCCCCCCCCCCTTCGCCCCCA
TTTTTTCTCTCCTCCCCCTATCCCACCCCCACCCCCCCCCCTTTTAACTT
CACCTCTTTTAATCCCCCTCTCCGTACTTATCTCCCCCATCCTCTCTCCC
CCCCTCACAATATAATATTAACACAAATCCCAACATATCTCCTCCCCACC
CCCCCACCCCACTACCATTATCCCATAATTAAACATAAAACCACCACCCT
TTTATCTCTCTCATCCCCCCCCCCTTCCTTCTCCTCCTTTCTCCTCCCCC
CTTACCGCCCCCTCTTTACCCCCCGCCTCTCCATTCTTACTACTTCTTTC
CCTCCTACCCTT

Query= MSMg01no441_m04.b1 MSMg01no441_m04.b1 CHROMAT_FILE:
MSMg01no441_m04.b1 PHD_FILE: MSMg01no441_m04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:40 2005
         (559 letters)



>mm_chr2_76970928_76971886
          Length = 959

 Score = 1042 bits (539), Expect = 0.0
 Identities = 551/555 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctggctttcacctttaaaactactttcaggtagataccaactacaactgtttct 64
           ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctggccttaacctttaaaactactttcaggtagataccaactacaactgtttct 264

                                                                       
Query: 65  tctgatatacaagtagcatacagatattcttcatcttacaacagtgttatactagtaacc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tctgatatacaagtagcatacagatattcttcatcttacaacagtgttatactagtaacc 324

                                                                       
Query: 125 agaatctgagagaacaccactgcatatcatcagtactaagcagacttagtgagctataat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agaatctgagagaacaccactgcatatcatcagtactaagcagacttagtgagctataat 384

                                                                       
Query: 185 aaaaaatgaacacataaacgtgggagaagaggagtgggaggagatatggccaaatacact 244
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaaaaatgaacacataaacgtggaagaagaggagtgggaggagatatggccaaatacact 444

                                                                       
Query: 245 gaaattgtatatgacattcccaagaataatgttaaagggaaatttttaagatttatttct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaaattgtatatgacattcccaagaataatgttaaagggaaatttttaagatttatttct 504

                                                                       
Query: 305 atgtctttaaacatggtaaaatcgaaagttcagtgtccacaaataaagttctattggaat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atgtctttaaacatggtaaaatcgaaagttcagtgtccacaaataaagttctattggaat 564

                                                                       
Query: 365 gcagccatgatgatttctgaatttatggctgttttcatgtcacaaaagtagagtttagat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gcagccatgatgatttctgaatttatggctgttttcatgtcacaaaagtagagtttagat 624

                                                                       
Query: 425 aattacaattcaaagggtaagatcatcaacaaagcctaaaatagtctccatttaactctt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aattacaattcaaagggtaagatcatcaacaaagcctaaaatagtctccatttaactctt 684

                                                                       
Query: 485 aaacagaacaaaacatactctgtgacctttagctgaaaagaaatagtaggaaatagtagg 544
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 685 aaacagaacaaaacatactctgtgacctttagctgaaaataaatagtaggaaatagtagg 744

                          
Query: 545 aaaatattcttttag 559
           |||||||||||||||
Sbjct: 745 aaaatattcttttag 759


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space:   521001
Effective search space used:   521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)