BAC Information

Click to search

BAC

Clone NameMSMg01-442K10
Chromosome2 (Build37)
Map Location 121,448,510 - 121,448,749
singlet/doubletsinglet
Overlap geneFrmd5
Upstream geneStard9, Cdan1, Ttbk2, Ubr1, Tmem62, Rnu3b-ps2, Ccndbp1, Epb4.2, Tgm5, LOC640543, Lcmt2, Adal, Zscan29, D2Ertd435e, Trp53bp1, Mtap1a, Hisppd2a, Ckmt1, Strc, Catsper2, Pdia3, Ell3, Serf2, LOC574418, 2310003F16Rik, Mfap1b, Wdr76p, Mfap1a, Wdr76
Downstream geneCasc4, Mageb3, Ctdspl2, Eif3s1, 4930424G05Rik, B2m, Trim69, 4933406J08Rik, LOC433468, LOC670832, Sord, Duox2, Duoxa2, Duoxa1, Duox1, Shf, Slc28a2, Bambi-ps1, Rp23-357i14.1, Gatm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-442K10.T7 (MSMg01no442_k10.b1)MSMg01-442K10.TJ (MSMg01no442_k10.g1)
ACCAG532245AG532246
length788772
length of high quality
(start - end)
254 (72 - 325)241 (82 - 322)
definitionCHROMAT_FILE: MSMg01no442_k10.b1 PHD_FILE: MSMg01no442_k10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:54 2005CHROMAT_FILE: MSMg01no442_k10.g1 PHD_FILE: MSMg01no442_k10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGATGGTCTATAAGTTGGGGCCGCTATAGGAGTCCTATTCAAAGCAGGAC
CGCGGAATTCTTCAGTCTCATGCTTCTACCTCCCAAGTGTTAGGATTACA
GGTGTGTGTAACCTACCGAGCTACTTTTAGTTACTACAATTCTTTTTTCT
TTTTGAGACAGGGCCCACTGTGTAGTTATGGCTGGCCTGGAGTGAGAGAT
CTTCATAGGTCCCTAACTTCTGGTGTGGGGACTGAAGGCATGTGCTGCTC
TGTTCACTGGACTAGACTTTTGTTTCTAATATTATAGTAAAAATGTTTTT
AGTATACAGTTTCTCTCTCTTATTTTTTTTCACCCACACACCAAAATGTA
TATTTATAAGATTCTTCACCTCAAATGGAAAACAGGTTGGACTGAGCTTG
GATTTCCTGATAGCCTACTCCTAACCCTAAGGAAGAAATAATGTACAAGA
ATTAGTATACAGATTAATATAATAACGAAAGAATACCCCCTCCATTCATA
TGTCCCGGTATCTGATCCCGGCTAGACTAACACTCATAAATAGTTCCACT
TCATTGTCGCGCAGGCCTGGTTGATATTCTTTATCATTTCCTCTCGTGTG
GTCCTTTATCTCGCCTGCTTTTTTTTTTTTCTTGCTTTGCGGCTTTTCTC
GCCGCTTTTTTTTCTTTTCATTCTTTTCCTCTTTTCTTCACGTCTCTCTT
ATTTTTTGTTTCCCCCCCCCCCCTCCCTTCCTTCTTTTTTTCCCCTCCCC
CTCTGTGTTTTTTTGCCTTCTTCTTACTTTCTCTCCTT
NCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCATGTAGCCCAAGCTCGCC
TTGAACTTGAATAGATTCTCCTCTTGCATCTGTCTCCTTAGTCCTGGAAT
AATTAGACATCTATCTTAATCTATGGCTACAATAAAAATTACATCCACAA
ATGCCTTTAATTTTTATGAGTGCAGGGTGGGGAGGCACGGATAAGCATGT
ACCATATCACAGCGTGGAAGTCAGAAGGCCATCCGGGCGTCAGTTCTCAC
CTTCAGCTTGTTACGGTGGTGTCTTTTTTCTTTCAGTCACTGCCTCAAAC
CCAAGCTGTCCAGTAGGCTCCTGGGGATCGCCCTGTCTCTGCCTCCCATT
GCCTGAGTAGCTCTGCCATCACAAACTATAGGATTTATGCATTGAATTCG
AGCTCCAAGGTTTAACTCGGGTCACCTGCCTTACTTGTCTAGTGTTTTGA
CCATTGATTTCTCTCCCCGATTTTTTAAACGTTTTTATCTTTCATTTTCT
CTGTAGCCCAACGTTTGTTTATTTCCTCCTACTTTCTCTTTCTTTTTTTC
TTCCTCTCCTCTTTTTTTTCTGTCTTTTTCTCATTCGTTTTCTTTTCCTT
TCCCCCCCCGTCTTTTCTTTTTTTTCTCCCTCTTCATTGTTTCCCCCCCC
TCCCCCCTCCTTTATTCTTCCCCCCTTGTCTCCCCCCCGCCTTTTTTCTT
TCTGTTTCTCTCTCTCCTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no442_k10.g1 MSMg01no442_k10.g1 CHROMAT_FILE:
MSMg01no442_k10.g1 PHD_FILE: MSMg01no442_k10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:54 2005
         (241 letters)



>mm_chr2_121448231_121448871
          Length = 641

 Score =  449 bits (232), Expect = e-131
 Identities = 238/240 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgtagcccaagctcgccttgaacttgaatagattctcctcttgcatctgtctccttag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 catgtagcccaagctcgccttgaacttgaatagattctcctcttgcatctgtctccttag 460

                                                                       
Query: 61  tcctggaataattagacatctatcttaatctatggctacaataaaaattacatccacaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tcctggaataattagacatctatcttaatctatggctacaataaaaattacatccacaaa 400

                                                                       
Query: 121 tgcctttaatttttatgagtgcagggtggggaggcacggataagcatgtaccatatcaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 399 tgcctttaatttttatgagtgcagggtggggaggcacggataagcatgtaccatagcaca 340

                                                                       
Query: 181 gcgtggaagtcagaaggccatccgggcgtcagttctcaccttcagcttgttacggtggtg 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 gtgtggaagtcagaaggccatccgggcgtcagttctcaccttcagcttgttacggtggtg 280


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)