BAC Information

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BAC

Clone NameMSMg01-442L24
Chromosome2 (Build37)
Map Location 101,885,482 - 102,028,688
singlet/doubletdoublet
Overlap geneLdlrad3, LOC674202
Upstream geneB230118H07Rik, Rag2, Rag1, LOC100042930, Traf6, 2600010E01Rik, LOC100043302, Commd9
Downstream geneTrim44, Fjx1, E430002G05Rik, Slc1a2, Cd44, Pdhx, Apip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-442L24.T7 (MSMg01no442_l24.b1)MSMg01-442L24.TJ (MSMg01no442_l24.g1)
ACCAG532320AG532321
length844808
length of high quality
(start - end)		294 (74 - 367)248 (80 - 327)
definitionCHROMAT_FILE: MSMg01no442_l24.b1 PHD_FILE: MSMg01no442_l24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:03 2005CHROMAT_FILE: MSMg01no442_l24.g1 PHD_FILE: MSMg01no442_l24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,028,395 - 102,028,688)(101,885,482 - 101,885,725)
sequence
NNGGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCC
GCGGAATTCCTAAACTCCTTCCGAAAGAAAAAGTAGAAATATATCTATGA
CAAAACTGTGCAAGGGGTTATTCTCTTGATAAACTGCAGGTTACTGCCCC
TACTCCTGTACTTGTTCTTTGGTTTCAGGACTGGCCACAGGTGTGAGAAA
TTACATTGTTAAGGGGACATACAACTTCATTCAAGGAGCAATATAAAATA
AATAACAAATTTCGAGTCATACAAAGGGAAGGGTAAGGGGCTGGGGTGGA
GAGATGGCTCATCAGATAAGAGCACTGACTGCTTTTTCAGAGGTCCTGAG
ATCAGTTCCCAGCAACCATTTGTGTTCTCCCTATCATCTGTAATGGGATC
TGATGCCCTCTTCTGGTGTCGCCGACCATATATATATATACCTATATACC
TATATATACCTCCCCCGCCCATTATTTATTATTTCTTCTTCTTTTTTTCC
CCCCTTTTTGTTTGTACTCCACATTCTCATACCTTCATTCTTTTTATAAT
TGCCCATCCTTTTTCCCTCTATCCCTTTTCTCTCCTCCCTTTCCGTTCTT
CTACCTTTCCTCTCCTCTTTTATTTTTTTCCCCTTATTTTTTTCCCATCT
TATATATTAGTTCCCTTTTTCTATTTTTTTCTCCCTATTTTTTATTCTAC
CCTATTTTTTCTTCTTCCCCTACCTTCTTTTTCTTTTCCGGCTCTTTTAA
TACTACTTTATTTTTTTCTTCTTTCCTCTTTCTATCTTTCTTCTCGCCCC
TTCTGTATTGTTTCTCTTCTTTCTCTTTTCTTTCTCCTCCTTTN

NCCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAATGGATGGAATTGTTAGG
AAGTGGGTCTTGGTAGAAGAGAAAATAGTCACTGTGATAGTGTGTGGTCT
TGTCTCTTCCTTTTCCTCTGCTTTCTATCTACTATGGGGTTGGCGGCTTT
CCTAGGCCAAAGGTACCTCACTACCATGAAGGCCTGCCCATGTACACGAG
ACCAAGTGACCATGATCTGCATCTGAGACGATAAGCCAAGACACAGCTTC
CCTCCCTTCAGATGTCAGTCACAGTGATATTTTTTTATCTAACAGACAGA
GCCAGCACGGCAGAACTTTGTTCACAGACCACCATGGCCTCTACCCATCA
GGATGGCCGGCAAATGGCCTCCCCCACCCTGCCATTTTTTTTTCATTTCC
GCTGAATTTCTCGCCATTTTGTCTTGCTCCCTTATTCTTCCCTCCCTCTC
CCCTTTTCTCTTTTTTCTTACTCCGCCCTCCCTCTCTTTTTTTCCTCCCC
CCTTTCTTCTTTTTCTCCCTTCTTTTCTTCTTTCCTCTCTCTTCCCCTCC
CTTTCTTCCCCCCTTTCTTCTTTTCCCTCTTTTCTCCTTTATTGTTTTTC
TTTTTCCCCCTTCCTCTTTTCCTCCCACCCACTTCTTTTTTTTTTTTATT
TCCCCCCTCCCCCCCCTCCCTTTCCTCTCCCTTTTTCATTATCATTTCCC
ACCCCCCCCATCATCCCTTTTATTTGCTATTTCCCCCCTCCATTCCTCTT
TCCTTTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no442_l24.b1 MSMg01no442_l24.b1 CHROMAT_FILE:
MSMg01no442_l24.b1 PHD_FILE: MSMg01no442_l24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:03 2005
         (294 letters)



>mm_chr2_102028270_102028963
          Length = 694

 Score =  561 bits (290), Expect = e-164
 Identities = 293/294 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagaaaaagtagaaatatatctatgacaaaactgtgcaaggggttattctcttgataaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 aaagaaaaagtagaaatatatctatgacaaaactgtgcaaggggttattctcttgataaa 360

                                                                       
Query: 61  ctgcaggttactgcccctactcctgtacttgttctttggtttcaggactggccacaggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ctgcaggttactgcccctactcctgtacttgttctttggtttcaggactggccacaggtg 300

                                                                       
Query: 121 tgagaaattacattgttaaggggacatacaacttcattcaaggagcaatataaaataaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 tgagaaattacattgttaaggggacatacaacttcattcaaggagcaatataaaataaat 240

                                                                       
Query: 181 aacaaatttcgagtcatacaaagggaagggtaaggggctggggtggagagatggctcatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 aacaaatttcgagtcatacaaagggaagggtaaggggctggggtggagagatggctcatc 180

                                                                 
Query: 241 agataagagcactgactgctttttcagaggtcctgagatcagttcccagcaacc 294
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 179 agataagagcactgactgctctttcagaggtcctgagatcagttcccagcaacc 126


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no442_l24.g1 MSMg01no442_l24.g1 CHROMAT_FILE:
MSMg01no442_l24.g1 PHD_FILE: MSMg01no442_l24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:03 2005
         (248 letters)



>mm_chr2_101885278_101885925
          Length = 648

 Score =  441 bits (228), Expect = e-128
 Identities = 240/244 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   tggatggaattgttaggaagtgggtcttggtagaagagaaaatagtcactgtgatagtgt 64
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 205 tggatggaattgttaggaagtgggtcttggtggaagagaaaatagtcactgtgatagtgt 264

                                                                       
Query: 65  gtggtcttgtctcttccttttcctctgctttctatctactatggggttggcggctttcct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtggtcttgtctcttccttttcctctgctttctatctactatggggttggcggctttcct 324

                                                                       
Query: 125 aggccaaaggtacctcactaccatgaaggcctgcccatgtacacgagaccaagtgaccat 184
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 325 aggccaaaggtacctcactaccatgaaggcctgcccatgtgcacgagaccaagtgaccat 384

                                                                       
Query: 185 gatctgcatctgagacgataagccaagacacagcttccctcccttcagatgtcagtcaca 244
           || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 385 gaactgcatctgagacgataagccaagacacagcttccctcccttcagatgtcggtcaca 444

               
Query: 245 gtga 248
           ||||
Sbjct: 445 gtga 448


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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