BAC Information

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BAC

Clone NameMSMg01-443A16
Chromosome2 (Build37)
Map Location 45,070,469 - 45,070,779
singlet/doubletsinglet
Overlap genenone
Upstream geneArhgap15, Gtdc1, Zeb2
Downstream geneLOC100042661, LOC100041337, LOC666604
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443A16.T7 (MSMg01no443_a16.b1)MSMg01-443A16.TJ (MSMg01no443_a16.g1)
ACCAG532543AG532544
length678710
length of high quality
(start - end)
313 (52 - 364)361 (83 - 443)
definitionCHROMAT_FILE: MSMg01no443_a16.b1 PHD_FILE: MSMg01no443_a16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:30 2005CHROMAT_FILE: MSMg01no443_a16.g1 PHD_FILE: MSMg01no443_a16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCCCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAGATGACTTATAATTTTCCATTATTTAGAAGAGAAAGAA
TATAACTGACTTATTTTTTATTGTTGGATATTTAGCTTCTTTGTAATTTT
TTCATTATGAAGAACATCATTCCCACAAACATTTTTCTGCAAGTGTATTT
AAAAGTACAATTAATATTGTATTCAATATATGAATATTTTAAAAGGAATT
TAACCTAAGTGCTTTTCTGAAAACTTGTAACAATTTATCTGCACTTCAGT
ATTTTCTAATAGATTTGTCATCTTCAAATCGTGACTTTTAAAAGTTTTGA
CATATTCTGAAGGGGATGGCTGTGGAGGTCCTGCTTTTCCTGCCCCAGTT
CCAGTTGAATAAGCCAGTCATGACTAACGTGTTCTTGAACCCCATAATGA
TGAAAAGCCCATCACAGAAGGCCCTTTTACTTTGGGGATTATGGTGTTTC
CCCGGGTAAAAATTTTTCCCGGAAATAAACTAAGTTTTCCCTTGACCCCC
CTTATTAAAAAGAATTTTTCTTTTTTTTCCACCCCCTCCCCCTTCCTTTC
TCTTCTTTTCTCTTCCCCCTTTCCTCACATATTTTTTTCCTTTTCTTTTT
TCCCTCCTTTTTTTTTTAATCTTTGGCC
TTAATCCCCAGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACAGAAATTCTTGACAATTAGAAAGGGAC
TCTAAGAATCATTTAAATCATCATATTTCTGAAGATGATTCCAATTGACT
AGGCACATGGAGACATTTATTTATTTATTTATTTATTCATTCATTCATTC
ATTTATTCATTTATTATATGTAAGTACACTGTAGCTGTCCTCAGACACTC
CAGAAGAGGGCGTCAGATCTCATTACGGATGGTTGTGAGCCACCATGTGG
TTGCTGGGATTCAAACTCAGGACCTTCTTTTTAGTTGTCAGTGTTCTTAA
CCACTGAGCCATCTCTCCAGCATGAAGACATTCTTAGGTCACCAAAACTT
CAGTGCTAAACTGGGAAAGTCACAAACAGATTAGTTCCTCACCCAGGACC
ATGTAGATCAATTTGCTGGCAAACTTAAAGACTTTTCTATTGTATCTCTA
TAAAGGGGTTTTTAGGAAAATTCCGACTTTGATAATTAAGAGCTCTTATG
CAGACCATGAATTTTTTTAACACCCTGAAAACACTGTTTCCCGAGGGGCA
AAGCGTGCTGGATTAACCCAAAACTGCCTAAAGGGTGGGAAAACCCAAAA
AGTTAAAGGGCCATATAACAAAAAAAACATCCCTCTTTTGTGCCAAAGGG
CCTCAAGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_a16.b1 MSMg01no443_a16.b1 CHROMAT_FILE:
MSMg01no443_a16.b1 PHD_FILE: MSMg01no443_a16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:30 2005
         (313 letters)



>mm_chr2_45070265_45070979
          Length = 715

 Score =  555 bits (287), Expect = e-162
 Identities = 305/313 (97%), Gaps = 6/313 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagatgactta---taattttccattatttagaagagaaagaatataactgactt 61
           |||||||||||||  |   |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 205 gaattcagatgac--aaaataattttccattatttggaagagaaagaatataactgactt 262

                                                                       
Query: 62  atttttt-attgttggatatttagcttctttgtaattttttcattatgaagaacatcatt 120
           ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 263 atttttttattgttggatatttagcttctttgcaattttttcattatgaagaacatcatt 322

                                                                       
Query: 121 cccacaaacatttttctgcaagtgtatttaaaagtacaattaatattgtattcaatatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 cccacaaacatttttctgcaagtgtatttaaaagtacaattaatattgtattcaatatat 382

                                                                       
Query: 181 gaatattttaaaaggaatttaacctaagtgcttttctgaaaacttgtaacaatttatctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gaatattttaaaaggaatttaacctaagtgcttttctgaaaacttgtaacaatttatctg 442

                                                                       
Query: 241 cacttcagtattttctaatagatttgtcatcttcaaatcgtgacttttaaaagttttgac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 cacttcagtattttctaatagatttgtcatcttcaaatcgtgacttttaaaagttttgac 502

                        
Query: 301 atattctgaaggg 313
           |||||||||||||
Sbjct: 503 atattctgaaggg 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 715
Length adjustment: 9
Effective length of query: 304
Effective length of database: 706
Effective search space:   214624
Effective search space used:   214624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)