BAC Information

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BAC

Clone NameMSMg01-443L06
Chromosome2 (Build37)
Map Location 166,584,922 - 166,585,049
singlet/doubletsinglet
Overlap genenone
Upstream geneEya2, Prkcbp1, LOC546780, Ncoa3, Sulf2, LOC670775, Ppia-ps2_2197.1, BC067047
Downstream geneTrp53rk, Arfgef2, LOC670802, Cse1l, Stau1, LOC383774, Ddx27, AI481105, 1500012F01Rik, LOC668950, Kcnb1, Ptgis, LOC668951, B4galt5, Slc9a8, Spata2, Zfp313, Snai1, Ube2v1, AI840826, Cebpb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443L06.T7 (MSMg01no443_l06.b1)MSMg01-443L06.TJ (MSMg01no443_l06.g1)
ACCAG533046AG533047
length839760
length of high quality
(start - end)
128 (75 - 202)247 (78 - 324)
definitionCHROMAT_FILE: MSMg01no443_l06.b1 PHD_FILE: MSMg01no443_l06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:23 2005CHROMAT_FILE: MSMg01no443_l06.g1 PHD_FILE: MSMg01no443_l06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCGATCTCAAATTTGCGGCGCTAAACGACTCACATAGTTCGAAATCGGCG
GAATTCTTTGTAATTTCCCCGAGCCAGGTGTGGTGGTGCCTTTAACCTCA
GCACTTGTGGGGTAAGGTTATGGACCGAGGCAGAGGCAAGATTAACGTAA
AAATATATTCACATAACAAAACTGTGGGTTTTTTTGCTTGTTTGTTTGGT
TGGCTCCTTGTTATCCTTTTCCCTCCCCCTCCCTTCTCCCCCCCCCCCTT
TTTTTTTCCCCTCCCTCTTTCCTCTTCCCTTTCTTCCCCCCCCCCCCACT
CCTTCATCTTATTTATTCAACCCTTTTTTTTTCCTCCCTATTTTCCTCCT
TCCCCCCCCCCTCTTTTTATCTCTTTCCCTCCCTATCTCTCCCTCATCCT
TTTTTCCTTCCATTTTATACCTTTTCCTTTCTTTCCCCTTCCATCCTTAC
TTTCTCCTCTTTCTCCTACTTCTCCTATTACCCCCTTTTCCTTTTCATTC
TCCTCTACCCATCCGTCCTCCCTTTTTTTTCTCCCTTTTTTATTCCCTCT
TTTTATCTCTCTCCCCTACCCTTTATTTCCTCTCCCCCCTCCATATTTCC
TCTCTTTTTTCCCCATACCCTCTCTTCACTTATATCTCCCTACACCCTCC
ACATTTTATTCTCCCTCCTCTCCTTANTTCTTTTTATTTCTCTTCTTCCC
CACTTCCTCCCCCCCCCCTCTTTCTCCCGCTTCGCCCCTCTCCTTATCTC
CATTCCATATTTCTACCCCACCCACCATTCCTTCTCTCCCCCCCCCTTTC
CCCTTTTTTACTTCATTTCCCTCTTTCTTCCCTCCCCCC
TTTACGATGCAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTTCACCAGCTTTTGTTGTGC
AGCCTTGCTCCTTAGTTCAGAACTACTGGGTGAATAAAGATGCCTACAAA
CTACAGCAGGGGAGAAGAGAGATAGGCAGGGCCTCGGTTCCCAGAATTGG
CGCTGGAGGCACAGAACCAAGAAAAGGTGGAGAGAGAAGATGTCACAGGG
AACGGCTGGCCAATTGGGAGTATGAGGGGCCTAGACCAAACACAGCCTAG
TGAATTGTAATTGGGGTTACTGATATTTATTTAGATACTAATAGCTTAGA
GGGCTGATATTTGCCGAGCTCTAGTGCTGCTAAGGTTTATTATAAACGCA
AAGGTTTTGTGCGTCCTTTATCTGGCAATTGTATGATCTAAGGTAGAGTA
CACTCCCCCAATTACTATTACCACTCCTGTCCCTGCTGCCCCTATTCTGG
CACTTTTTACCCGCGCCCCACATCTTACCTCGAAGGCTTTTAACATCCCC
CCGCCCCACCCCTTTAATTTTTTCCCTTCCCGCCCTTTTTTTAATGTTTT
CACCCGTGGTCCCACCCCCCCGCTAATACGTCTCCCCTCTTCTTTATACG
CCACCCTTTTTTTACAACTTCCTCCCCTTTTCTTCCCCCCCTTTTCCCCG
CCCCTCCCTTTCTTCTTTTTAATTTCGCCCCACTTATTTCGCCCTCTTAC
TTTTTCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_l06.b1 MSMg01no443_l06.b1 CHROMAT_FILE:
MSMg01no443_l06.b1 PHD_FILE: MSMg01no443_l06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:23 2005
         (128 letters)



>mm_chr2_166584722_166585249
          Length = 528

 Score =  194 bits (100), Expect = 2e-54
 Identities = 121/128 (94%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggtgtggtggtgcctttaacctcagcacttgtggggtaaggttatggaccgaggcaga 60
           |||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||
Sbjct: 201 caggtgtggtggtgcctttaacctcagcacttgtggggtaaggggatggagcgaggcaga 260

                                                                       
Query: 61  ggcaagattaacgtaaaaatatattcacataacaaaactgtgggtttttttgcttgtttg 120
           ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 261 ggcaagattaaagtaaaaatatattcacataacaaaactgtgggtttttttgtttggttg 320

                   
Query: 121 tttggttg 128
            |||||||
Sbjct: 321 gttggttg 328


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 128
Length of database: 528
Length adjustment: 8
Effective length of query: 120
Effective length of database: 520
Effective search space:    62400
Effective search space used:    62400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)