BAC Information

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BAC

Clone NameMSMg01-443L23
Chromosome2 (Build37)
Map Location 87,594,329 - 87,594,745
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038, LOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141
Downstream geneOlfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175, Olfr1176, Olfr1177, Olfr1178, Olfr1179, Olfr1180, Olfr1181, Olfr1182, Olfr1183, Olfr1184, Olfr1185-ps1, Olfr1186, Olfr1187-ps1, Olfr1188, LOC668528, Olfr1189, GA_x5J8B7W4NS2-37772-38277, Olfr475-ps1, Olfr526-ps1, Olfr1192-ps1, Olfr1193, Olfr1194-ps1, Olfr1195, Olfr1196, Olfr1197, Olfr1198
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443L23.T7 (MSMg01no443_l23.b1)MSMg01-443L23.TJ (MSMg01no443_l23.g1)
ACCAG533079AG533080
length886774
length of high quality
(start - end)		---417 (77 - 493)
definitionCHROMAT_FILE: MSMg01no443_l23.b1 PHD_FILE: MSMg01no443_l23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:26 2005CHROMAT_FILE: MSMg01no443_l23.g1 PHD_FILE: MSMg01no443_l23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GAAATACGAACCTGTGGAGTCATGATAGGCGAGATTTTATTTCGTAAAAA
ACAAACTAAACAATCAATTTTATTCGACATAAATAATGACAATGAAAAGA
CTGATAATTGGTACCGACAAACACAAACAAATATCAGGAAGATAGAGAAC
GGAAACCACATTAATAACCAGCGCCTAATCTCCCCAAGGAGATTTTTTTC
AAAACACATCTCGCGCCACGGTCTTAGCGGACCCAATATTATCTATTAGG
CTTGTCCGGCTAACCCCATGAAATGTTGTTTTAAAATATAAAAGAAATAC
AGTACCGCCAACAGTAAGACCGCCGTTGTGACACGGCGGAGGGTGGGATA
ACACCCCTTTTTATAACACAAAAAACACGAATACGAATTTTCACACCCAA
TGAGTCCTTTCACTTTACCTCCGAATAATAAAAAAAAAAATAAAAGAGCG
GGCCCGAATAAAAAAACACGACCCTTTTAAAACACGCCCATTACCGGTAA
TTCACTAACCCACCGAACGCCACATAATACTCCCCCTGACGGTGAAGCCG
CACACACCTCCCTATGCAATAAAATAGCGCGCCCACACATTTAACCGCAC
GCAATACAAAACGCTCGCACATATATGGGACGACGCGTACATCTAATATT
TATTTTAACGCTCGGCGTTAACTTATTTCTATAGCCGATTTTGTTATATT
ATTTATCACCCCCTAGGCGACACAAGTCTTAAATTTCTCGCGGGCAAGTA
TTCGTATCAAAAATTAATATTCACACGACTATCGCGGCCCGCTCGGAATG
AATATACTCATGCCTTATAAAGTAATCGCAAAGCGCTTATTAATAATATC
AATTCGAGCATCGTTAAAATACGGCAATACAAGGGG

TTTCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATACAGGGAGTCAAACAAGTTACA
CAGAGGGGTGATAGTAGTTTGTCAAACCCTGAGATAATGAAAGAAGGAAA
CAAATCGACAAATTGTATTTTGGTTTAACTAATATTATACTCCAAAACTG
GTACCATAATTCTGTTGAGTTACTGTCTTTCAATATAACTGTTGGTGTCC
CAGGTGATTATATTTGTTAAATATGTAATGATTGCACTTCTTGTAGATAA
AGATATATCCATTCACAAACCTTCTGTTTTATCTTCCTTAATTTGAAAGT
TTCTTTGTACCGTTTTCAATATAACAATCATGATTAAATTTATTCAAAAG
CACATTTTAATATGAATGATGGAGACACAGACAATTCAGAGGTCTCATGA
ATTGCAAAACCGTTCAAATTTCATCTTCAACTTCCTAAAGTAGAACCTTA
TTTTTATATAACAATGGCTCTTCTATACTACTTGTACCTCACTAGTTTTA
AATGTATATAATTAAACAAGTTTATCTTTTGCCTATAAAAAAAAACGCGG
AAATAGCCCCAAAAAGAAATCCTACCCCTTTTCCCTTTGAATTTTCCAAC
CGGCCCGATAAAAAAAAAGTAAACTTGGCCACTGAAAATTGGCCTTCTTT
TACCTAAAACCCCTCTTCCGGCGATTGTCACAAACCCTTATTTGAATGGC
TACCCCTTACTTCTTCCTATTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_l23.g1 MSMg01no443_l23.g1 CHROMAT_FILE:
MSMg01no443_l23.g1 PHD_FILE: MSMg01no443_l23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:26 2005
         (417 letters)



>mm_chr2_87594129_87594945
          Length = 817

 Score =  783 bits (405), Expect = 0.0
 Identities = 414/417 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atacagggagtcaaacaagttacacagaggggtgatagtagtttgtcaaaccctgagata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 atacagggagtcaaacaagttacacagaggggtgatagtagtttgtcaaaccctgagata 558

                                                                       
Query: 61  atgaaagaaggaaacaaatcgacaaattgtattttggtttaactaatattatactccaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 atgaaagaaggaaacaaatcgacaaattgtattttggtttaactaatattatactccaaa 498

                                                                       
Query: 121 actggtaccataattctgttgagttactgtctttcaatataactgttggtgtcccaggtg 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 497 actggtaccataattctgttgagttactgtctttcgatataactgttggtgtcccaggtg 438

                                                                       
Query: 181 attatatttgttaaatatgtaatgattgcacttcttgtagataaagatatatccattcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 attatatttgttaaatatgtaatgattgcacttcttgtagataaagatatatccattcac 378

                                                                       
Query: 241 aaaccttctgttttatcttccttaatttgaaagtttctttgtaccgttttcaatataaca 300
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 377 aaaccttctgttttatcttccttaatttgaaagtttctttgtaccattttcaatataaca 318

                                                                       
Query: 301 atcatgattaaatttattcaaaagcacattttaatatgaatgatggagacacagacaatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 atcatgattaaatttattcaaaagcacattttaatatgaatgatggagacacagacaatt 258

                                                                    
Query: 361 cagaggtctcatgaattgcaaaaccgttcaaatttcatcttcaacttcctaaagtag 417
           ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 257 cagaggtctcatgaattgcaaaaccgttcaagtttcatcttcaacttcctaaagtag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space:   329664
Effective search space used:   329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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