BAC Information

Click to search

BAC

Clone NameMSMg01-444D13
Chromosome2 (Build37)
Map Location 73,292,563 - 73,292,840
singlet/doubletsinglet
Overlap geneWipf1
Upstream geneCdca7, LOC383712, LOC635960, LOC100039928, 6430710C18Rik, Sp3, Hspe1-ps5, Gtpbp9, LOC620110, Sp9, 1700023B02Rik, Scrn3, Gpr155
Downstream geneChrna1, Chn1, Atf2, Atp5g3, LOC667729, LOC100040172
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-444D13.T7 (MSMg01no444_d13.b1)MSMg01-444D13.TJ (MSMg01no444_d13.g1)
ACCAG533441AG533442
length735753
length of high quality
(start - end)
97 (438 - 534)278 (377 - 654)
definitionCHROMAT_FILE: MSMg01no444_d13.b1 PHD_FILE: MSMg01no444_d13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:03 2005CHROMAT_FILE: MSMg01no444_d13.g1 PHD_FILE: MSMg01no444_d13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATATTTGCGGCCGCTAAANGAATCACAAATTGCGAAGCTTGCCGGAA
NNCNNNGTTTTGACCNGCACCCGGGGNNNAANGGGGNNANNNGANNNNCG
GCAGNCCACCCTCTTTAGCCCCCNANAGANANGGGANANNAGNCCCCGGN
CNGANNNAGGACAGGNAAAGAGCCGTGCCCAANCNGNCGGNGACCNTNNT
GNNCCANCGACAGCGGCNNNNTGCCTTGCAGAAGCTTTGCAATTTTATTT
TGTCCCATTTGTCAATTCTCGATCTTACAGCTCAAGCCATTGCTGCTCTA
CTCAGGAATTTTTTTTTTTTTTTCCANAACNNCGAGGCNNNNCCCNACNN
CCNCCNCTATATGTTTCAGCGTCTCTGGTTTTATGTGGAGCTCCTTAATC
CACTTAGATTTGACCTTAGTACAAAGAGATAGGAATGGATCAATTCGCAT
TCTTCTACATAATAACCACCAGTTGTGCCAGCACCATTTGTTGAAAATGC
TATCTTTTCTTCCACTGGATGGTTTTAGCTCCCTTGCCCAATATCACACG
AACATACGCGTGTGGCGCCACCTCTGGGCCTTCCCTTCTATTCCATTGGT
CTACTTGTCTGTCACCACCCTTTACCACACCGTTCCCATCTTTTTTGTTT
CTTTTTTTACTACAGCCTCCACGTAGGCCCGTTGACTCCCCCCGAGACTC
TCCCTCTTTTCCACCCCTGTTTACAATTCCCGCCC
CCCATGAAGTGGGAGGCCTGGNGGNCGGCTGGCTTTCCTCACTAGGNGAA
CNANAGAAGGATTACANGACCACAGGGAGAGAGCACAACCCNCAATTCGG
ACTATNTCATTNAGATTATTCGCCCAAGAGTCACTGAAGAAATAAAAGAA
GCCCTTAAGTACACTGAGAATTAACCTAAGTGAGTCTTTCTCATTTGCAG
AAAGTTCAAGTGTGTGGGGGGCGAGTCAGGATGCAGGTGAGGTGTGCAGT
TTTTTGCATCACTGCAAGCGAGCTTGGGAATGCCAGCAGGGCCTAAGCCA
AGATAAAGGGTGCACAGATTTGTCGTTTACCCGCAGCTTTCTAGACCGGA
AGGNNNNGNTCTCTCTCTCCACACCTACAGGGTGACAATCAACTCTGCTA
GAACATATTTGACAAAGGCAGACAGAGACTGAAGGCAGAAGAGGGAGGCA
AGTTCTTACTTCTGAGGTAGATGGCAAGGGAGGGAATACAGGATTTCACA
GCCTTGGGTCTGGCATAGAGTAGCATAAAATAGTCATACATTTCTTTTGA
TGCGTCTGAGAAATTCACATTCATTTTTGCAACACATACCATGTAACTTA
GCACATAGCTTCAGGTGAAAGAATAAAAACCGAGATATATTTCAGAACGC
TTCATTATTTCTTTTCATGTAAGATCCTGACTCCGGTGTACAAAGCCCAG
TTACCGACACTTCCTGACTATGTGACCGGNTGTTGCGGCGTCAGAGTGCT
TGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no444_d13.g1 MSMg01no444_d13.g1 CHROMAT_FILE:
MSMg01no444_d13.g1 PHD_FILE: MSMg01no444_d13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:04 2005
         (278 letters)



>mm_chr2_73292363_73293040
          Length = 678

 Score =  484 bits (250), Expect = e-141
 Identities = 271/278 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagggtgacaatcaactctgctagaacatatttgacaaaggcagacagagactgaaggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagggtgacaatcaactctgctagaacatatttgacaaaggcagacagagactgaaggc 260

                                                                       
Query: 61  agaagagggaggcaagttcttacttctgaggtagatggcaagggagggaatacaggattt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 agaagagggaggcaagttcttacttctgaggtagatggcaagggagggaatataggattt 320

                                                                       
Query: 121 cacagccttgggtctggcatagagtagcataaaatagtcatacatttcttttgatgcgtc 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 cacagccttgggtctggcatagagtagcataaaatagccatacatttcttttgatgcgtc 380

                                                                       
Query: 181 tgagaaattcacattcatttttgcaacacataccatgtaacttagcacatagcttcaggt 240
           ||||||||||||||||||||||| ||||||||||||||| ||||||| || |||||||||
Sbjct: 381 tgagaaattcacattcatttttgtaacacataccatgtagcttagcaaatggcttcaggt 440

                                                 
Query: 241 gaaagaataaaaaccgagatatatttcagaacgcttca 278
           |||||||| |||||||||||||||||||||||||||||
Sbjct: 441 gaaagaatgaaaaccgagatatatttcagaacgcttca 478


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space:   179961
Effective search space used:   179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)