Query= MSMg01no444_k22.b1 MSMg01no444_k22.b1 CHROMAT_FILE:
MSMg01no444_k22.b1 PHD_FILE: MSMg01no444_k22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:39 2005
(404 letters)
>mm_chr2_34821890_34822693
Length = 804
Score = 739 bits (382), Expect = 0.0
Identities = 400/408 (98%), Gaps = 4/408 (0%)
Strand = Plus / Plus
Query: 1 gagatggctcagtggttaagagcactgactgctcttccagagttcctgagttcaactccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 gagatggctcagtggttaagagcactgactgctcttccagagttcctgagttcaactccc 256
Query: 61 agcaaccacatggtggctcacaaccatctgtaatgggatccagtgctcccttctggtgtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 agcaaccacatggtggctcacaaccatctgtaatgggatccagtgctcccttctggtgtg 316
Query: 121 tctgaagacagctaagtgtacacacatataga----aaataaataaataaataaaacaat 176
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 317 tctgaagacagctaagtgtacacacatatagaaaataaataaataaataaataaaacaat 376
Query: 177 tttaaaaaaaagaattccgtctcagagctgttactttggggaacttgggtgtcggtggca 236
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ttaaaaaaaaagaattccgtctcagagctgttactttggggaacttgggtgtcggtggca 436
Query: 237 aagctggagggtatagtatgtggcaaagctggagattataacaggtggcaaggtccaggg 296
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 aagctggagggtatagcaggtggcaaagctggagattataacaggtggcaaggtccaggg 496
Query: 297 gaagagcttgacagataaaaacaacccctgagatcccacactggggaaggccttaaccgg 356
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 497 gaagagcttgacagataaaaacaacccctgagatcccacactggggaaggccttaacccg 556
Query: 357 aacccactcctctttgccttcgctggctgcccatgtgccatgtgctct 404
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aacccactcctctttgccttcgctggctgcccatgtgccatgtgctct 604
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 804
Length adjustment: 9
Effective length of query: 395
Effective length of database: 795
Effective search space: 314025
Effective search space used: 314025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no444_k22.g1 MSMg01no444_k22.g1 CHROMAT_FILE:
MSMg01no444_k22.g1 PHD_FILE: MSMg01no444_k22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:39 2005
(441 letters)
>mm_chr2_35013379_35014218
Length = 840
Score = 837 bits (433), Expect = 0.0
Identities = 439/441 (99%), Gaps = 1/441 (0%)
Strand = Plus / Minus
Query: 1 tcatttaactaaagaactctagagaaggcagagcttcaactatgtgactctgggctgcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 tcatttaactaaagaactctagagaaggcagagcttcaactatgtgactctgggctgcat 581
Query: 61 gtgtaagctgagttaacaccacgtcccagggctgccagggaagctaaaggaaatggcgtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 gtgtaagctgagttaacaccacgtcccagggctgccagggaagctaaaggaaatggcgtt 521
Query: 121 catgaagacctaggaagtcactttccctctttgggtttatgctgcattgtgtcttaaaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 catgaagacctaggaagtcactttccctctttgggtttatgctgcattgtgtcttaaaga 461
Query: 181 atgctactaccactcactcggtagtccagaggtaacatgccagcaaagaacatctcagaa 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 460 atgctactaccactcactcggtagtccagaggtaacgtgccagcaaagaacatctcagaa 401
Query: 241 cctttctttctttcaatttcaacttggctgaacctaaatgaatagaaatctatgacccag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 cctttctttctttcaatttcaacttggctgaacctaaatgaatagaaatctatgacccag 341
Query: 301 aaattgaaaatagatcattacttctgttaccaacttgatgaaggaagatttctgtaacaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 aaattgaaaatagatcattacttctgttaccaacttgatgaaggaagatttctgtaacaa 281
Query: 361 tcgatttgttatttaaaaagacgcagattgaaaagtccgaagtcaaaccaaacaaacaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 tcgatttgttatttaaaaagacgcagattgaaaagtccgaagtcaaaccaaacaaacaac 221
Query: 421 cacctcacctnctgccccaca 441
|||||||||| ||||||||||
Sbjct: 220 cacctcacct-ctgccccaca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 840
Length adjustment: 9
Effective length of query: 432
Effective length of database: 831
Effective search space: 358992
Effective search space used: 358992
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
