BAC Information

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BAC

Clone NameMSMg01-444M20
Chromosome2 (Build37)
Map Location 100,157,952 - 100,158,591
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC621386, LOC668702
Downstream geneLOC100042907, LOC241572, LOC668705
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-444M20.T7 (MSMg01no444_m20.b1)MSMg01-444M20.TJ (MSMg01no444_m20.g1)
ACCAG533883AG533884
length761746
length of high quality
(start - end)
426 (73 - 498)640 (72 - 711)
definitionCHROMAT_FILE: MSMg01no444_m20.b1 PHD_FILE: MSMg01no444_m20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:48 2005CHROMAT_FILE: MSMg01no444_m20.g1 PHD_FILE: MSMg01no444_m20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTAATTTTGTGACAATATTTGGAATTATTTGTGTGAATTGTAT
GAACTCAGGTTGTGATTATCACATTGAAAAACATAAAAAGCAACAACAAA
ACAATCAGCTATGAGAATAGCTTATCAGTTTTTTATTGGTGTAATGCCCA
GTCCATAAGATGAAATCTGTACATGTCACTGCTGAAATGGCCAAGAATTG
AGACAGGATAGTTCCTTGGTCTAGAGGGAAATACTCTATTCTGCTAGAGG
AATATAGGAACTCCATGACTCTAAATGATATAATGCTATACCAATGATCA
GGGCCTTATTCAGCTCTTCCCAAGAAGTCTTTCTTGCAGTAGATGGAGTT
AACACAGGCTCACAAGTGGACAATATTCAGATGATAAGTTTTTGGTTTAT
TTAGTCCTGTGCAGGGTGTCTATCATACCCATCCTCTCTAGATTCAGAAA
ATATGAAGATGAAGATGGGGCCAGAGTGTAAGAGCCATAAGTGATGGAAG
ATTTCAAGGGAACAGTGTCTTTCTGACCCAACAGGACGGATGCACACGCG
AACTCACTCAGAATTTTGAGAGCCCACCGAATCCCTTTATAATTCTCGGT
AAGGGGAGATCCCCCTTCTTGAAATAATAAGAAGCGGAAAAAAAAAAGGC
TCTCTCCTTTTTTCCCAAAACACATTTTTCTTTGGATTTCTCCCCCTTGC
CAAACAAAGAG
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGCGAGGGAGACCATGTTGGAGGACAATA
TTTGGGATGTTAATAAATAAAATAATTAATAAGTGATACATGTGAAATGT
GTAGGTACACATACACATAAAATACCAATAAATTTAATTTAATTGATATA
TTGACTATATAATTTTATTTGTTAAATGTTATTGGTTATCAATAAGACCT
TATAGAAAGCTCTAACATAATTAGAAAAAAAACTCGATAGAGAAATAGAC
ATGTTACATGCTACAGTCTCACAAAGAAACCCAGTTAGTTACATTCTGAA
AGCTGAATTGAAACAATGCTAAGATGCTTCTTTTTATGTATTTGAATATG
AGAAATACAAATATATTATAGTTTCAGATGACTTATTCTCATATACTTTT
TTATGGTAATATGATAACCATTTCAAAGGCAATCATTGCTAATTTTCTAC
TATATATGCTCAATTAACCCATTTTCACGCTTTTCCTGACACCCACAAAT
GACACACAAACTAAGATTTTTATTATGAGATTTTTATGAAGTAGAATATT
AGAAACTCATGTGCATTCAGCAATAAAGTTATAATCATACTAGATAACGC
ACTCTATAAAATTCTGTGGCATAAAGCAATAGTAACCATGTGGGTACATC
TATCTTTGTGGTAGGGTACAGAGTCATCTGGGTCCCTACACAGGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no444_m20.g1 MSMg01no444_m20.g1 CHROMAT_FILE:
MSMg01no444_m20.g1 PHD_FILE: MSMg01no444_m20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:49 2005
         (640 letters)



>mm_chr2_100157752_100158791
          Length = 1040

 Score = 1214 bits (628), Expect = 0.0
 Identities = 637/640 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcgagggagaccatgttggaggacaatatttgggatgttaataaataaaataattaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcgagggagaccatgttggaggacaatatttgggatgttaataaataaaataattaata 260

                                                                       
Query: 61  agtgatacatgtgaaatgtgtaggtacacatacacataaaataccaataaatttaattta 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 agtgatacatgtgaaatgtgtaggtccacatacacataaaataccaataaatttaattta 320

                                                                       
Query: 121 attgatatattgactatataattttatttgttaaatgttattggttatcaataagacctt 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atagatatattgactatataattttatttgttaaatgttattggttatcaataagacctt 380

                                                                       
Query: 181 atagaaagctctaacataattagaaaaaaaactcgatagagaaatagacatgttacatgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atagaaagctctaacataattagaaaaaaaactcgatagagaaatagacatgttacatgc 440

                                                                       
Query: 241 tacagtctcacaaagaaacccagttagttacattctgaaagctgaattgaaacaatgcta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tacagtctcacaaagaaacccagttagttacattctgaaagctgaattgaaacaatgcta 500

                                                                       
Query: 301 agatgcttctttttatgtatttgaatatgagaaatacaaatatattatagtttcagatga 360
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agatgctcctttttatgtatttgaatatgagaaatacaaatatattatagtttcagatga 560

                                                                       
Query: 361 cttattctcatatacttttttatggtaatatgataaccatttcaaaggcaatcattgcta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttattctcatatacttttttatggtaatatgataaccatttcaaaggcaatcattgcta 620

                                                                       
Query: 421 attttctactatatatgctcaattaacccattttcacgcttttcctgacacccacaaatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attttctactatatatgctcaattaacccattttcacgcttttcctgacacccacaaatg 680

                                                                       
Query: 481 acacacaaactaagatttttattatgagatttttatgaagtagaatattagaaactcatg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acacacaaactaagatttttattatgagatttttatgaagtagaatattagaaactcatg 740

                                                                       
Query: 541 tgcattcagcaataaagttataatcatactagataacgcactctataaaattctgtggca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgcattcagcaataaagttataatcatactagataacgcactctataaaattctgtggca 800

                                                   
Query: 601 taaagcaatagtaaccatgtgggtacatctatctttgtgg 640
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 taaagcaatagtaaccatgtgggtacatctatctttgtgg 840


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space:   648900
Effective search space used:   648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)