BAC Information

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BAC

Clone NameMSMg01-445F09
Chromosome2 (Build37)
Map Location 89,364,965 - 89,365,476
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1186, Olfr1187-ps1, Olfr1188, LOC668528, Olfr1189, GA_x5J8B7W4NS2-37772-38277, Olfr475-ps1, Olfr526-ps1, Olfr1192-ps1, Olfr1193, Olfr1194-ps1, Olfr1195, Olfr1196, Olfr1197, Olfr1198, Olfr1199, Olfr1200, Olfr1201, Olfr1202, Olfr1203, Olfr1204, Olfr1206, Olfr1208, Olfr1209, Olfr1211, Olfr1212, Olfr1213, Olfr1214, Olfr1215, Olfr1216, Olfr1217, Olfr1218, Olfr1219, Olfr1220, Olfr1221, Olfr1222, Olfr1223, Olfr1224-ps1, Olfr1225, LOC435676, Olfr1226, LOC100042983, GA_x5J8B7TTH1T-1160-261, Olfr1227-ps1, Olfr1228, Olfr1229, Olfr1230, Olfr1231, Olfr1232, Olfr1233, Olfr1234, Olfr1235-ps1, GA_x5J8B7W62NC-668773-668438, Olfr1237-ps1, Olfr1238, Olfr1239, Olfr1240, Olfr1241, Olfr1242
Downstream geneOlfr1243, Olfr1244-ps1, Olfr1245, Olfr1246, Olfr1247, Olfr1248, Olfr1249, Olfr1541-ps1, Olfr1250, Olfr1251, GA_x5J8B7TT7VM-20-924, Olfr1252, GA_x5J8B7W62NC-992588-991951, Olfr1253-ps1, Olfr1254, Olfr1255, Olfr1256, Olfr48, Olfr1257, Olfr1258, Olfr1259, Olfr1260, Olfr1261, Olfr1262, Olfr1263, Olfr1264, Olfr1265, Olfr140, Olfr1266-ps1, Olfr1267-ps1, Olfr1268-ps1, Olfr1269, Olfr32, LOC100043090, Olfr1270, LOC627525, LOC100043096, Olfr1506, Olfr142, Olfr1271, Olfr1272, Olfr1273, LOC100042690, LOC100043113, LOC668629, GA_x5J8B7W2BV0-3116-4045, Ptprj, 4933423P22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445F09.T7 (MSMg01no445_f09.b1)MSMg01-445F09.TJ (MSMg01no445_f09.g1)
ACCAG534291AG534292
length732741
length of high quality
(start - end)
521 (54 - 574)427 (69 - 495)
definitionCHROMAT_FILE: MSMg01no445_f09.b1 PHD_FILE: MSMg01no445_f09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:30 2005CHROMAT_FILE: MSMg01no445_f09.g1 PHD_FILE: MSMg01no445_f09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXTTACTCTGTGGTAGTCTAATAGAATAAATGGGATTAATTCAATGTTC
TTGTTTCTGTTGAGGCCTGCTTTGGGCCCAATTATGTGGTCTGTTTTGTA
GAAGGTACCATGAGGTATTAGCAAGAAGGTATATTCTTTTGTTTAGAGTG
AAATATTTTGAAGATATCTATTAATTCTATTTGGTTTGCTTTACATGTTT
ATATCTGTAGGGATATAAACCTCATCTGAACCTCATTTTGAGGTTTTCCA
ACAGCTGTTTTTTTCTGCATTACTAGAGTCAATATTATTTTAATTGTGTC
TTGATTATGTAAGGTTTATTCTTAAATTTATGTGTATGTGTAGGTATGAT
TCACTGAAAATATGTGTGCCATGAGCATTCATGTACCCGCAGAAACTCAA
GGTCATCAGATCCCCCTGAAACTGTATTTAGACATCTGTAATCCAACCGC
TAAGTGTGTTTGGAACCAAACCTCCATACACTAAAAAAGCAGATAGCATT
TTCTTAACTGATTAATCCTTTCTGCAAAGTTCAGATATTTAGTAAAGTCC
TAATATTTACACAAATAATTTTCAGAAGATATAATATCTTTAGCTTTTAT
ACAGGGATAGATTGCCAAATTATGGAAATAATATACGCTGAAAATTTGCG
TAAAAAACAGTTGATTGTGTTCCTAAATATAT
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATACAGTTGAATCCTTCTTAACAGTCTGCTTT
ACGGGAACCTTTATCACCGTCGTTCCCCAGCTGATGAGTTCTGAATTCGG
CAGTTGAATCCTTCTCAACAGTCTGTGTTACGGGAACCTTTATAAACGTG
ATCCGCAGTTCTGGTTCCGGAATGAGGGATCTTCCCTGCGCCAGTCCGGA
GTTTTTTCTCGTCCCGGAATTCGGCACCAATTGTTATTCGACGCGTTCTC
ACGACCGGCCAGGAAGAACACCACAGACCAGAATCTTCTGCGGCAAAGCT
TTATTTCTTATATCTTCAGGAGCAAGCGTGTAAGAAGCAAGAGAGCAAGA
AGCAAGAGAGAGCCGAAAAGGGAGAATGGCGGGAACCCCGTCCCTATTAA
GGAGCATTCTCCTTCGCCTCGGACGTGTCACTCCTTGATTGGCTGCAGCC
CATCGGCCGAGTTGACGTCTCGGGGAAGGCAGAGCACAAGTAGTCATAAG
ATACCCTTGGCACATGCGCAGATTATTTGTTTTACCCCTTAAAACACAGG
ATGTCCGCGCCCTTCTTTGTTAGGCGAAATGGGGGGGCGGGCTTCCAACA
GCTGGGAAATGGCTTTTATTAAGTTCAAAAAGGGGGCCCTTATTTCCCTT
ATCTTTCCTGGACTTTTATCATGAGGAGCGTTCGGATTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_f09.b1 MSMg01no445_f09.b1 CHROMAT_FILE:
MSMg01no445_f09.b1 PHD_FILE: MSMg01no445_f09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:30 2005
         (521 letters)



>mm_chr2_89364756_89365676
          Length = 921

 Score =  915 bits (473), Expect = 0.0
 Identities = 504/521 (96%), Gaps = 13/521 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   tctgtggtagtctaatagaataaatgggattaattcaatgttcttgtttctgttgaggcc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 tctgtggtagtctaatagaataaatgggattaattcaatgttcttgtttctgttgaggcc 269

                                                                       
Query: 65  tgctttgggcccaattatgtggtctgttttgtagaaggtaccatgaggtattagcaagaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tgctttgggcccaattatgtggtctgttttgtagaaggtaccatgaggtattagcaagaa 329

                                                                       
Query: 125 ggtatattcttttgtttagagtgaaatattttgaagatatctattaattctatttggttt 184
           |||||||||||||||||||||||||||||||||||||||||||||||||     ||||||
Sbjct: 330 ggtatattcttttgtttagagtgaaatattttgaagatatctattaatt-----tggttt 384

                                                                       
Query: 185 gctttacatgtttatatctgtagggatataaacctcatctgaacctcattttgaggtttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gctttacatgtttatatctgtagggatataaacctcatctgaacctcattttgaggtttt 444

                                                                       
Query: 245 ccaacagctg----tttttttctgcattactagagtcaatattattttaattgtgtcttg 300
           ||||||||||    |||    |||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccaacagctgcaaattt----ctgcattactagagtcaatattattttaattgtgtcttg 500

                                                                       
Query: 301 attatgtaaggtttattcttaaatttatgtgtatgtgtaggtatgattcactgaaaatat 360
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attatgcaaggtttattcttaaatttatgtgtatgtgtaggtatgattcactgaaaatat 560

                                                                       
Query: 361 gtgtgccatgagcattcatgtacccgcagaaactcaaggtcatcagatccccctgaaact 420
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgtgccatgagcattcatatacccgcagaaactcaaggtcatcagatccccctgaaact 620

                                                                       
Query: 421 gtatttagacatctgtaatccaaccgctaagtgtgtttggaaccaaacctccatacacta 480
           |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 621 gtatttagacatctgtaatccaaccgctaaatgtgcttggaaccaaacctccatacacta 680

                                                    
Query: 481 aaaaagcagatagcattttcttaactgattaatcctttctg 521
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaaaagcagatagcattttcttaactgattaatcctttctg 721


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space:   465521
Effective search space used:   465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)