BAC Information

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BAC

Clone NameMSMg01-445M05
Chromosome2 (Build37)
Map Location 4,641,089 - 4,641,561
singlet/doubletsinglet
Overlap geneE130319B15Rik
Upstream gene3110001A13Rik, LOC100040257, LOC100040163, LOC666944, 1700080N15Rik, Frmd4a, EG634452, Prpf18, LOC623483
Downstream geneLOC666973, Sephs1, Phyh, LOC381346, LOC100040250, LOC100040426, 1110017I16Rik, Mcm10, Optn, Ccdc3, LOC100040292, Camk1d, LOC666599
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445M05.T7 (MSMg01no445_m05.b1)MSMg01-445M05.TJ (MSMg01no445_m05.g1)
ACCAG534616AG534617
length752755
length of high quality
(start - end)
562 (37 - 598)501 (66 - 566)
definitionCHROMAT_FILE: MSMg01no445_m05.b1 PHD_FILE: MSMg01no445_m05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:05 2005CHROMAT_FILE: MSMg01no445_m05.g1 PHD_FILE: MSMg01no445_m05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGAG
ATTTTACACACCTCATGGTGATAATCTGGCATGAGAAAATAACCGAAAAT
TAGTATTTTAATGACTTCAACAAATAGGAATAAGCAGCTAAAGACTCCCA
TCCCAGATGTATAATCTACAAGTATACTTTCAAGAACTCTCACAGAATCG
GAGTCAATACTAATCACCAAACGTTACTTACTGTGAAGTACAGGAACCTG
AAATACCACTGCACCTTACAAAACAGATATGCTTGGCTACAGCAAGTATA
TTTGTAAAATTATAATAAAATAAATAAAAAAGAAAGAAAAGAAAAAAAAT
CTTGCCAAATCACAGGCCAATGGAGTTTCTCAAATGTATTTCCACTACCA
TTTCTGTGAGCATATCAATAGCATGTTTCGGAACTGCCTCTCTACTGGGT
TTACCCAGAAAATCTCAGCTTAAAAGTAAGGATGCATTTTTTTTTTAAAG
ATATTGATGTGTTATTTTTTTAAAGGTATACTTTGAAAAGAAGCAAGTCT
TTTACCTTTCACATAAGTGAATCTTTTGCAATTACTGCCCTTACTGAAGA
TGCAATAGTTTATCTTCCAAAAAAAAAATGAAAAGCAGCTGCTCAGCAGA
ATCCCTCACCATTAAAAAAGAAGGGAAAACTTACTATGTTAATCCAAATT
TCCAATATAACATCCTGGGGATCTCCTGGGGTAGCCTCAGCATTTTGTTA
AG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXACTATTGAAATTTTCTGTATATAAAATTTTCCTTC
TAGAAAGATTATTTATTTATTTATTTATTTATTCACAACCCCCAATTATC
CCGATCACAACCCCCTCCCTCCTATCTTCCCAGTTCCAACCTCACCCCCC
TCCCCCAGCCCCATCTTTTTGTCCCGCATGGGTTCCAACCTGCCGTGACA
TATCAAACTGTACCAGGACTAAGAGCATGCTATCCCACTGAGGCCAGACA
AAGCAGCCCAGCGAGGGTAAAGGGATCCAAAGGCAGACAACTGAGACAGT
CCCCAGCTCAATTGTTAGGGGACTCTCATGAAGACCAAGCTAAACATGGG
CTATATATGTGTAGGGGGACCTAGGAACCAGCCCCTGTATGCTCTTTGGT
TGGTGGCTCAGTCTCTGTGAGCCCCAATGGGCTCAGGTTAGTGGACTCTT
AGGACTTTTTGTGATATCCCTGATCCCTCCAGTACCCCCAATCCTTCTGT
CCACTCTTCCACAAGACTCAACAGTTCCATCTAATGGTTGAATGTGGGCC
TCTTCTTTCTGTTTCATCAACTGCTGGATGAAGCCTCTCACGAGAAAAGT
TAACTAGGTTCCTGGGCTGCAGTATGGCAAATACATGAAAAGTGGCCGCG
AGTGGTTCTTTCCCATGCGAGGGGGTCTCAGCTTGTGCCCATCCTTGGTT
TGGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_m05.b1 MSMg01no445_m05.b1 CHROMAT_FILE:
MSMg01no445_m05.b1 PHD_FILE: MSMg01no445_m05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:05 2005
         (562 letters)



>mm_chr2_4641089_4642050
          Length = 962

 Score =  855 bits (442), Expect = 0.0
 Identities = 466/474 (98%), Gaps = 2/474 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgagattttacacacctcatggtgataatctggcatgagaaaataaccgaaaat 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 gaattctgagattttatacacctcatggtgataatctggcatgagaaaataaccgaaaat 414

                                                                       
Query: 65  tagtattttaatgacttcaacaaataggaataagcagctaaagactcccatcccagatgt 124
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 413 tagtattttaatgacttcaacaaataggaataagcacctaaagactcccatcccagatgt 354

                                                                       
Query: 125 ataatctacaagtatactttcaagaactctcacagaatcggagtcaatactaatcaccaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ataatctacaagtatactttcaagaactctcacagaatcggagtcaatactaatcaccaa 294

                                                                       
Query: 185 acgttacttactgtgaagtacaggaacctgaaataccactgcaccttacaaaacagatat 244
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 293 acgttacttactgtgaagtacaggaacctgaaataccactgcgccttacaaaacagatat 234

                                                                       
Query: 245 gcttggctacagcaagtatatttgtaaaattataataaaataaataaaaaagaaagaaaa 304
           ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 233 gcttggctacagcaagtatatttgtaaaaataaaataaaataaataaaaaagaaagaaaa 174

                                                                       
Query: 305 g-aaaaaaaatcttgccaaatcacaggccaatggagtttctcaaatgtatttccactacc 363
           | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 173 gaaaaaaaaatcttgccaaatcacaggccaatggagtttctcaaacgtatttccactacc 114

                                                                       
Query: 364 atttctgtgagcatatcaatagcatgtttcggaactgcctctctactgggtttacccaga 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 atttctgtgagcatatcaatagcatgtttcggaactgcctctctactgggtttacccaga 54

                                                                 
Query: 424 aaatctcagcttaaaagtaaggatgcattttttttttaaagatattgatgtgtt 477
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 53  aaatctcagcttaaaagtaaggatgcatttttttttt-aagatattgatgtgtt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space:   525504
Effective search space used:   525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)