BAC Information

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BAC

Clone NameMSMg01-445O01
Chromosome2 (Build37)
Map Location 78,198,182 - 78,303,625
singlet/doubletdoublet
Overlap genenone
Upstream geneZfp533, BC003993, LOC667920, OTTMUSG00000016703
Downstream geneLOC383717, LOC100040476, LOC100040494, 4930401B11Rik, Ube2e3, LOC100040526, Itga4, Cerkl, Neurod1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445O01.T7 (MSMg01no445_o01.b1)MSMg01-445O01.TJ (MSMg01no445_o01.g1)
ACCAG534704AG534705
length780759
length of high quality
(start - end)
386 (32 - 417)453 (64 - 516)
definitionCHROMAT_FILE: MSMg01no445_o01.b1 PHD_FILE: MSMg01no445_o01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:14 2005CHROMAT_FILE: MSMg01no445_o01.g1 PHD_FILE: MSMg01no445_o01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,198,182 - 78,198,460)(78,303,250 - 78,303,625)
sequence
GCCGCTATACGACTCACTATATTCATAGGATCCGCGGAATTCACTCTCTT
ACCTGCGCATAAGGCTTGTTTACTAGTTGGGCACAGTGGAAGCCAGCGCC
ATCTTATAATGGCGATTGCTCACGGCACGGCTCTCCACAGTGTTCCCCCC
CATGTCTTTGGACTCTCTCCACTGCTTTCCAGTTTTTCCCCTTTAGTCTA
TGCTCTGTGTATTTTCTTCCCCAAACTTTAGTCATTATATAAGATACCCT
AACATCTATGTTCCTCTTGAATGGCTGTTCTCAACTCTAATTTCCTATGG
AAACATTGAATTTGTGTCTAAATGATGGAACTGTTCCATCTTTCAAACTT
CTAATTCACTTTACTTGTGCTTGGTCAGTGAATGATATGATCCTTACACT
AGATTGCACAGTCTAGAAGCCTAGCTTCCTTTCTCTCAAACCTATATCCA
GTTTTCCACAAACTTGAAAAATACTGCATTAAACTTTTGCTTAGATCTCT
ATTCTTCTATAGCTTTGAACTATTGTTGACTACCCATGGCCTTTTCTTGG
CTTACTATAGCATCCTCTTGGAGTCTCAATGAATGCCCCACCCCCTTTCT
ACCAAACCGTGCATATCAAAATTCTTAGCACTCTCTTTTATTACCCACTG
TCATCCCCCTCCCTTGATTCGCCCCTTTTTCTTTTTTATGTCCACTTACA
TTTCATATTAATCGAACTCCTTCTTTTACCCTTTACACCCTTTACCATCA
TATTACCACACTCCACTTTTTCGCTCTTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTTAAAACATTTATGGAAGAGGAAACAAAGAATTTT
TTAGAGTCTAGTTAAGGAAGTAAGGACACAGGCTCTGGTTTGAACATCTC
GTTCTCTTTACTAAGTGCTAGTTTTAAATGACTGACAAAGCCTCTTTGTA
CTGTTGCTTTCTTTCCCTGAGAGATGGGGAAATTATAGTCCTTAACTTTG
GCTATTGTGAGGAAAAAAATCCAGTTGCCGAATACATGAGGTGCTTAAAA
GAGTGCATGGTGCAAGTTACATACAATATTAATGATTATTTTTAGCAAGC
AGCCTGAATGCTTTTTAATAGCTTATGTTTTGGATTTCCATTCTAAACTG
TTCCAAGGAAAGCAGTGTAAACTGTAGAAAATGGAGAATCCAGCTTCTGC
CACAGTAACTCCTGTCTTGTGTCTCTGTGTCCTTGGATGTAAAATAAGAT
TGTGACATTTGCTGAGAGATAGGCAGATGTAATAAACAAATGGTACAGTT
TGCCCTTCTGAGTAAAGGTGCCCTATGGTGTACACTTGAGGATATCCCTT
TGTGTGTTCTTACCATAGTGAAATCCCCGGTTTTGCTCTCCCACGGTTTC
TTCTCTGCCTTCCCTTCACGCCCTTCAATATATTTAACAGTAGCTACTAT
CCGCACTACCTTTTATTTTCATCCCTTATTTCTTTCTCTATTTCCCCGCC
ATTCCATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_o01.b1 MSMg01no445_o01.b1 CHROMAT_FILE:
MSMg01no445_o01.b1 PHD_FILE: MSMg01no445_o01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:14 2005
         (386 letters)



>mm_chr2_78197875_78198660
          Length = 786

 Score =  501 bits (259), Expect = e-146
 Identities = 274/279 (98%)
 Strand = Plus / Plus

                                                                       
Query: 108 agtgttcccccccatgtctttggactctctccactgctttccagtttttcccctttagtc 167
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 agtgttcccccccatgtctttggactctctccactgctttccagtttttcccctttagtc 367

                                                                       
Query: 168 tatgctctgtgtattttcttccccaaactttagtcattatataagataccctaacatcta 227
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 368 tatgatctgtgtattttcttccccaaactttagtcattatataagataccctaacatata 427

                                                                       
Query: 228 tgttcctcttgaatggctgttctcaactctaatttcctatggaaacattgaatttgtgtc 287
           ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgttcctcttggatggttgttctcaactctaatttcctatggaaacattgaatttgtgtc 487

                                                                       
Query: 288 taaatgatggaactgttccatctttcaaacttctaattcactttacttgtgcttggtcag 347
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 taaatgatggaactgttccatctttcaaacttctaattcactttacttgtgcttggtcag 547

                                                  
Query: 348 tgaatgatatgatccttacactagattgcacagtctaga 386
           |||||||||||||||||||||| ||||||||||||||||
Sbjct: 548 tgaatgatatgatccttacactggattgcacagtctaga 586


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 786
Length adjustment: 9
Effective length of query: 377
Effective length of database: 777
Effective search space:   292929
Effective search space used:   292929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no445_o01.g1 MSMg01no445_o01.g1 CHROMAT_FILE:
MSMg01no445_o01.g1 PHD_FILE: MSMg01no445_o01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:14 2005
         (453 letters)



>mm_chr2_78302773_78303625
          Length = 853

 Score =  727 bits (376), Expect = 0.0
 Identities = 376/376 (100%)
 Strand = Plus / Minus

                                                                       
Query: 78  tgaacatctcgttctctttactaagtgctagttttaaatgactgacaaagcctctttgta 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 tgaacatctcgttctctttactaagtgctagttttaaatgactgacaaagcctctttgta 794

                                                                       
Query: 138 ctgttgctttctttccctgagagatggggaaattatagtccttaactttggctattgtga 197
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 ctgttgctttctttccctgagagatggggaaattatagtccttaactttggctattgtga 734

                                                                       
Query: 198 ggaaaaaaatccagttgccgaatacatgaggtgcttaaaagagtgcatggtgcaagttac 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 ggaaaaaaatccagttgccgaatacatgaggtgcttaaaagagtgcatggtgcaagttac 674

                                                                       
Query: 258 atacaatattaatgattatttttagcaagcagcctgaatgctttttaatagcttatgttt 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 atacaatattaatgattatttttagcaagcagcctgaatgctttttaatagcttatgttt 614

                                                                       
Query: 318 tggatttccattctaaactgttccaaggaaagcagtgtaaactgtagaaaatggagaatc 377
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 tggatttccattctaaactgttccaaggaaagcagtgtaaactgtagaaaatggagaatc 554

                                                                       
Query: 378 cagcttctgccacagtaactcctgtcttgtgtctctgtgtccttggatgtaaaataagat 437
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 cagcttctgccacagtaactcctgtcttgtgtctctgtgtccttggatgtaaaataagat 494

                           
Query: 438 tgtgacatttgctgag 453
           ||||||||||||||||
Sbjct: 493 tgtgacatttgctgag 478


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space:   373449
Effective search space used:   373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)