BAC Information

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BAC

Clone NameMSMg01-446D15
Chromosome2 (Build37)
Map Location 41,558,481 - 41,558,810
singlet/doubletsinglet
Overlap geneLrp1b
Upstream geneLOC100042629
Downstream geneLOC625094
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446D15.T7 (MSMg01no446_d15.b1)MSMg01-446D15.TJ (MSMg01no446_d15.g1)
ACCAG534972AG534973
length735744
length of high quality
(start - end)
661 (63 - 723)330 (319 - 648)
definitionCHROMAT_FILE: MSMg01no446_d15.b1 PHD_FILE: MSMg01no446_d15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:41 2005CHROMAT_FILE: MSMg01no446_d15.g1 PHD_FILE: MSMg01no446_d15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGAATTCTTTATTT
TTGCAAGAGACCCATTTTTAATGGGGTTATTTGATTTTCTGGAGTCCACC
TTCTTGAGTTCTTCACATGATATGTACTCACTGATAAATGGATATTAGCC
CAGAAACTATGAATACCCAAGATAGAAGATACAATTTGCAAAACACAGGA
AACTCAAGAAGAATGAAGACCAAAGTGTGGACACTTTGCCCCTTCTTAGA
ATTGGGATTAAAACACCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGC
TGTGTCAAAAGGTTGTACTACATAGAGCCTGCCATATCCAGGGATCCATC
CCATAATCAGCCTCCAAACGCTGACACCATTGCATACACTAGCAAGATTT
TGCTGAAAGGACCGAGATATAGCTGTCTCTTGTCAGAATATGCCAGGGCC
TAGCAAACACAGAAGTGGATGCTCACAGTCAGCTATTGGATGGGTCACAC
GGCCCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCT
GCAACCCTATAGGTGGAACAACAATATGAACTAACCAGTATCCCCCAGAG
CTCGTGTCTCTAGCTGCATATGTATCATAAGATGGCCTAGTAGTCCATCA
TTGTGAAGAGAGACCCCTTGGTCTTGCAAACTTTATATGCCTCAGTACAG
GGGAACTCCAGGGCCAAGAAGTGGGAGTGGGTGGT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCAGAAATTCTACACTTCTTAATTATTTGCATATTGGCTCTCTAAGAG
TTTCAAAAATAAGGTCTACCTATACGAGACAAATTACACAAACTCTTTGG
ATTTTATTTTAAATTTGACTCTGTTGAAACAAAAGACATTTAATATTCAA
ATGTTTAAAATTATATTTAGGTCATTTTGTTCTCTGTTTATTATTTATTT
TGCTTTTATATATGTTCATATATTACCTGTGTGCCTAGTGCTCATGGAGA
TCAGAAGATATGGTTGTTATCAAATAGATTTGAAATTGCAGATGGTGATG
TACTACCATTTGAATTTAGTGAAACAGACCCTCAGTTCTATGCAAGAACT
ATAGCATCTCTCAATAACTCAGCAATCTCTCAGGCTTCAGACATTTATTA
ATTTAAAGTACATGTCTTTCTAAAACAATACTTTCATTTCCTTAACATTT
TATAATTAATCTTGACAGTAGAATGAGGTTAATATCTAACATGTTTGTCA
TTGAGAGAACTGCCAGAGAATCATTCTGTAATTATTTATTTTGTCATTGA
GTTTTGTGGTTAAGTTTTGTTTTGATAGACTAAATGAAACTGATAACATG
TTTCTAACTGAATCCTTTTTTGCAACCACATTCCGCTAAGTATAGATCAG
NTTTATCTCTTCTTCCATTAAGGTTGTGTGTGTTCAGTATGTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_d15.g1 MSMg01no446_d15.g1 CHROMAT_FILE:
MSMg01no446_d15.g1 PHD_FILE: MSMg01no446_d15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:41 2005
         (330 letters)



>mm_chr2_41558281_41559010
          Length = 730

 Score =  545 bits (282), Expect = e-159
 Identities = 318/330 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcaaatagatttgaaattgcagatggtgatgtactaccatttgaatttagtgaaacaga 60
           ||||||||||| ||||| |||||||||||||||||||||||||||||||| | |||||||
Sbjct: 530 atcaaatagatgtgaaactgcagatggtgatgtactaccatttgaatttaatcaaacaga 471

                                                                       
Query: 61  ccctcagttctatgcaagaactatagcatctctcaataactcagcaatctctcaggcttc 120
           ||||||||||||||||||||| |||||||||||||||| ||||||  |||||||||||||
Sbjct: 470 ccctcagttctatgcaagaacgatagcatctctcaatagctcagccgtctctcaggcttc 411

                                                                       
Query: 121 agacatttattaatttaaagtacatgtctttctaaaacaatactttcatttccttaacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 agacatttattaatttaaagtacatgtctttctaaaacaatactttcatttccttaacat 351

                                                                       
Query: 181 tttataattaatcttgacagtagaatgaggttaatatctaacatgtttgtcattgagaga 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 350 tttataattaatcttgacagtagaatgaggttaatatctaacatgtttgtcattaagaga 291

                                                                       
Query: 241 actgccagagaatcattctgtaattatttattttgtcattgagttttgtggttaagtttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 290 actgccagagaatcattctgtaattatttattttgtcattgagttttgtggttaaatttt 231

                                         
Query: 301 gttttgatagactaaatgaaactgataaca 330
            ||||| |||||||||||||||||||||||
Sbjct: 230 cttttggtagactaaatgaaactgataaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space:   231441
Effective search space used:   231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)