BAC Information

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BAC

Clone NameMSMg01-446G10
Chromosome2 (Build37)
Map Location 121,248,235 - 121,248,478
singlet/doubletsinglet
Overlap genePdia3
Upstream geneGanc, Capn3, Zfp106, Snap23, Lrrc57, Cep27, Stard9, Cdan1, Ttbk2, Ubr1, Tmem62, Rnu3b-ps2, Ccndbp1, Epb4.2, Tgm5, LOC640543, Lcmt2, Adal, Zscan29, D2Ertd435e, Trp53bp1, Mtap1a, Hisppd2a, Ckmt1, Strc, Catsper2
Downstream geneEll3, Serf2, LOC574418, 2310003F16Rik, Mfap1b, Wdr76p, Mfap1a, Wdr76, Frmd5, Casc4, Mageb3, Ctdspl2, Eif3s1, 4930424G05Rik, B2m, Trim69, 4933406J08Rik, LOC433468, LOC670832, Sord, Duox2, Duoxa2, Duoxa1, Duox1, Shf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446G10.T7 (MSMg01no446_g10.b1)MSMg01-446G10.TJ (MSMg01no446_g10.g1)
ACCAG535106AG535107
length710729
length of high quality
(start - end)
244 (69 - 312)195 (118 - 312)
definitionCHROMAT_FILE: MSMg01no446_g10.b1 PHD_FILE: MSMg01no446_g10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:55 2005CHROMAT_FILE: MSMg01no446_g10.g1 PHD_FILE: MSMg01no446_g10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CCATCTTACATAAGAACAGCCAAGTGCTTTTAACCAATGATCCATCTCTC
AAGTCCCCTTGCCCCTATACTGGTTTTATATACTTTAAGTACTTGGGCCA
GTAAGATGGCTAAGCATGTAAAGGGGCTTACTGCTAAGCCTAAGGACTCA
CATTGGTCCATGCACACCTACCCACATAAACATGTAGTAAAATATATTCC
ATATTTCTTCCTCGTGAACACACCGATGCTCACCTTTGCTAATGGGACTA
TTCCTTTTAATCTGTTTTCTGCAGCTTCATACTCAGGGGCAAGCCTCTTG
CAATGTCCACACCTATGTTAAAAAAAAAAAAGCCAGATTCTTAGTTCAAC
ACAAACTTACTGATATTTTGATTCTCATATCATACTACCATATACCTTTT
TCTTTTTTCTAAAGACAGGGTCTTGTTACATAGTCCAGGCTGTGATCACC
CTTTTCCACCTCTATTGCACTGACTGTAGGATGCTATATCAATTATTCTA
CTACCAAATTATACCTGAGACTTCTGATATTTGAGTCATGACTTGTTTGC
TTTGCTCTTTTGAGGCAGGGCTTTAACCTGTAGCCTGTCCTGGAATTTAT
TGAGATCCTCCCGTCCCTGTCTCCTAAGTGTTGATAATATCGGTGTGACT
ACCACTTCCT
AATGTGGGAGGCCTGGNGGNCGCCTGGGTGCAAAACGGGAGGNGAACTAN
AGAAGTACCAGCAAAATGCGCTGACGCGGGNAAAAGGGCCAGCTGGGATG
CCCCCAGAGCTTGGGCACTAAGACTGTATCGATCCACAGGGACCGACCCG
GTGACCCTGTTCTCTTTGACCCGCCAGGTCCTCAATGTAGGACCCCGCGT
CCCCATTGGGCCTAATCCCGTGATCACTGAACAGCTACCCCCCTCTTTAC
CTGTGCAGATCATGCTCCCCAGGCCTCCTCATCCTCCTCCTTCAGGCGCG
GCCTCTATGTTGCCTGTTTTCTCCCCCGCCTTCTCAACAACCTGGGACGG
GAGACTGGCTGCTAAACCTGGTAGAAGGAGCTTACCAAGCACTCTACCTC
ACCAGTCCCGACAAAACCTAAGAGTGCTGGCTGTGTCTGGTATCGGGACC
CCCCTACTACGAAGGGGTGGCCGTCCTACGAACTTACTCCAACCATACCT
CTGCCCCGGTTATCTGCTCCGTGACCTCCTAACACATGCTGACTCTGTCC
GAAGTGACCGGTCCAGTTTACTCTGCTTACGAGCTTTCCCTATAACCTAT
CACGCTCCCTGTTGCCTTACCACCCAGAACACGACCGACGTGCCTCTCAT
TTTTTTGTTCTCTTCTCCTCGTGTATTTCTCGGCCCTCTGGTCCTTCATC
TTTCTTCTCCTCTTCCCTCTCCTTATTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_g10.b1 MSMg01no446_g10.b1 CHROMAT_FILE:
MSMg01no446_g10.b1 PHD_FILE: MSMg01no446_g10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:55 2005
         (244 letters)



>mm_chr2_121247906_121248549
          Length = 644

 Score =  464 bits (240), Expect = e-135
 Identities = 243/244 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gccaagtgcttttaaccaatgatccatctctcaagtccccttgcccctatactggtttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 573 gccaagtgcttttaaccaatgatccatctctcaagtccccttgcccccatactggtttta 514

                                                                       
Query: 61  tatactttaagtacttgggccagtaagatggctaagcatgtaaaggggcttactgctaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 tatactttaagtacttgggccagtaagatggctaagcatgtaaaggggcttactgctaag 454

                                                                       
Query: 121 cctaaggactcacattggtccatgcacacctacccacataaacatgtagtaaaatatatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 cctaaggactcacattggtccatgcacacctacccacataaacatgtagtaaaatatatt 394

                                                                       
Query: 181 ccatatttcttcctcgtgaacacaccgatgctcacctttgctaatgggactattcctttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ccatatttcttcctcgtgaacacaccgatgctcacctttgctaatgggactattcctttt 334

               
Query: 241 aatc 244
           ||||
Sbjct: 333 aatc 330


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)